Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00411 * 2 1 4 4 H 1.48496 * 109.47387 * 240.00011 * 3 2 1 5 5 H 1.48503 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46998 * 119.99832 * 3 2 1 7 7 C 1.37882 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99982 * 185.47857 * 7 2 1 9 9 C 1.50704 * 119.99749 * 5.47123 * 7 2 1 10 10 H 1.08996 * 109.47365 * 335.11896 * 9 7 2 11 11 C 1.52995 * 109.46981 * 215.10875 * 9 7 2 12 12 N 1.46903 * 109.47042 * 65.32835 * 11 9 7 13 13 C 1.50703 * 109.46642 * 95.11459 * 9 7 2 14 14 C 1.33990 * 126.91248 * 60.02291 * 13 9 7 15 15 O 1.34439 * 110.15646 * 179.97438 * 14 13 9 16 16 C 1.34854 * 110.89117 * 359.97438 * 15 14 13 17 17 C 1.38923 * 133.39212 * 180.02562 * 16 15 14 18 18 C 1.37811 * 119.97618 * 179.97438 * 17 16 15 19 19 C 1.38860 * 120.67433 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 119.87389 * 180.02562 * 19 18 17 21 21 C 1.37829 * 120.25150 * 0.02562 * 19 18 17 22 22 C 1.39425 * 119.58756 * 359.72929 * 21 19 18 23 23 H 0.97005 * 119.99907 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47568 * 305.32096 * 11 9 7 25 25 H 1.09012 * 109.46969 * 185.31931 * 11 9 7 26 26 H 1.00901 * 110.99973 * 56.04364 * 12 11 9 27 27 H 1.00897 * 111.00262 * 179.97438 * 12 11 9 28 28 H 1.08000 * 124.91950 * 359.97438 * 14 13 9 29 29 H 1.08005 * 120.01275 * 359.96453 * 17 16 15 30 30 H 1.07996 * 119.66038 * 180.02562 * 18 17 16 31 31 H 1.07994 * 120.20393 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1963 0.0888 9 6 1.2560 -2.4962 -0.1256 10 1 0.2344 -2.3637 0.2304 11 6 1.9538 -3.5681 0.7139 12 7 1.8645 -3.2113 2.1362 13 6 1.2329 -2.9255 -1.5700 14 6 2.2914 -3.1853 -2.3493 15 8 1.8842 -3.5415 -3.5800 16 6 0.5383 -3.5317 -3.6629 17 6 -0.3570 -3.8142 -4.6869 18 6 -1.7131 -3.7133 -4.4633 19 6 -2.1995 -3.3300 -3.2205 20 17 -3.9120 -3.2102 -2.9616 21 6 -1.3280 -3.0443 -2.1917 22 6 0.0460 -3.1479 -2.4046 23 1 -0.4850 0.8401 0.0004 24 1 3.0016 -3.6341 0.4210 25 1 1.4693 -4.5307 0.5497 26 1 0.9040 -3.0809 2.4166 27 1 2.3181 -3.9046 2.7121 28 1 3.3223 -3.1184 -2.0343 29 1 0.0097 -4.1128 -5.6580 30 1 -2.4045 -3.9345 -5.2629 31 1 -1.7072 -2.7467 -1.2253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259642734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = 14.308965 kcal Electronic energy + Delta-G solvation = -17531.473971 eV Core-core repulsion = 14611.745229 eV Total energy + Delta-G solvation = -2919.728742 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.78780 -37.65345 -35.87559 -35.60906 -32.41081 -31.96247 -29.88170 -29.19276 -27.20150 -24.22883 -22.95555 -21.87261 -21.40796 -19.04861 -17.04857 -16.73546 -16.07711 -15.65329 -15.43266 -14.74417 -14.38601 -13.81645 -13.68580 -13.52137 -12.90917 -12.82421 -12.36796 -12.14820 -11.92051 -11.31248 -10.99930 -10.84323 -10.80645 -10.76535 -10.55417 -10.40059 -9.87152 -9.15908 -9.06132 -8.46350 -8.03402 -7.74835 -7.40511 -6.02080 -4.01491 1.35360 1.59564 2.44321 3.15737 3.35383 3.38906 3.41555 3.42056 4.05673 4.45920 5.00098 5.05949 5.27804 5.46023 5.54856 5.57506 5.74683 5.95043 6.12038 6.21151 6.23228 6.46893 6.55743 6.58925 6.77344 6.85032 6.97911 7.28987 7.60429 7.82766 7.92225 8.01268 8.26204 8.35780 9.01226 9.59692 11.07212 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.006969 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.100259 B = 4016.564620 C = 4364.682382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.485 4.485 8 H 0.056 0.944 9 C 0.091 3.909 10 H 0.070 0.930 11 C 0.081 3.919 12 N -0.831 5.831 13 C -0.099 4.099 14 C -0.036 4.036 15 O -0.202 6.202 16 C 0.048 3.952 17 C -0.107 4.107 18 C -0.097 4.097 19 C -0.066 4.066 20 Cl -0.081 7.081 21 C -0.035 4.035 22 C -0.106 4.106 23 H 0.261 0.739 24 H 0.054 0.946 25 H -0.005 1.005 26 H 0.336 0.664 27 H 0.320 0.680 28 H 0.201 0.799 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -8.423 -5.499 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.522 4.522 8 H 0.074 0.926 9 C 0.072 3.928 10 H 0.088 0.912 11 C -0.050 4.050 12 N -0.358 5.358 13 C -0.102 4.102 14 C -0.099 4.099 15 O -0.104 6.104 16 C -0.001 4.001 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.093 4.093 20 Cl -0.053 7.053 21 C -0.054 4.054 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.149 0.851 27 H 0.130 0.870 28 H 0.218 0.782 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.152 -7.694 -5.889 9.925 hybrid contribution -0.261 0.318 0.157 0.440 sum -2.412 -7.376 -5.732 9.648 Atomic orbital electron populations 1.69868 1.05889 1.26757 1.50165 1.24919 0.94817 0.99122 0.94589 0.86694 0.79681 0.83286 0.78559 1.20440 1.21480 1.20134 1.20724 0.92986 0.89222 1.49312 0.92599 1.17501 0.99449 0.92615 0.83277 0.91222 1.21845 0.99490 0.94875 0.88770 1.58470 1.21936 1.51830 1.03610 1.22181 0.88615 0.98945 1.00412 1.23561 0.99944 1.05506 0.80864 1.83937 1.19636 1.73254 1.33613 1.19701 0.82451 1.01935 0.95983 1.19623 0.90265 1.05296 0.97349 1.20561 0.94197 1.01089 0.95688 1.20513 0.84219 1.08771 0.95770 1.98329 1.12931 1.97087 1.96922 1.20472 0.90583 0.95433 0.98908 1.19960 0.93971 1.02829 0.94017 0.92917 0.92773 0.98649 0.85122 0.86977 0.78215 0.85019 0.84676 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 12.77 55.43 0.71 -24.17 16 2 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.48 -12.57 7.89 -34.44 -0.27 -12.84 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.09 2.10 2.48 -92.92 -0.23 1.87 16 10 H 0.07 1.80 7.23 -51.93 -0.38 1.42 16 11 C 0.08 1.60 6.01 -3.82 -0.02 1.57 16 12 N -0.83 -15.51 9.35 -10.37 -0.10 -15.61 16 13 C -0.10 -2.16 5.06 -102.66 -0.52 -2.68 16 14 C -0.04 -0.70 11.53 29.24 0.34 -0.36 16 15 O -0.20 -3.87 10.58 3.81 0.04 -3.83 16 16 C 0.05 0.90 7.41 -38.49 -0.29 0.62 16 17 C -0.11 -1.66 10.06 -39.48 -0.40 -2.05 16 18 C -0.10 -1.43 9.79 -39.51 -0.39 -1.82 16 19 C -0.07 -1.12 6.32 -39.50 -0.25 -1.37 16 20 Cl -0.08 -1.23 28.95 -51.86 -1.50 -2.73 16 21 C -0.04 -0.69 9.87 -39.29 -0.39 -1.08 16 22 C -0.11 -2.22 6.38 -105.16 -0.67 -2.89 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.00 -0.09 8.14 -51.92 -0.42 -0.51 16 26 H 0.34 6.21 8.99 -39.29 -0.35 5.86 16 27 H 0.32 4.88 9.08 -39.29 -0.36 4.52 16 28 H 0.20 3.35 8.06 -52.49 -0.42 2.92 16 29 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.14 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -28.61 290.72 -7.84 -36.45 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.17 Total: 8.49 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -3.18 Total: -19.30 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.61 Total: -39.78 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.61 -7.84 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.760 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds