Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00411 * 2 1 4 4 H 1.48496 * 109.47387 * 240.00011 * 3 2 1 5 5 H 1.48503 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46998 * 119.99832 * 3 2 1 7 7 C 1.37882 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99982 * 185.47857 * 7 2 1 9 9 C 1.50704 * 119.99749 * 5.47123 * 7 2 1 10 10 H 1.08996 * 109.47365 * 335.11896 * 9 7 2 11 11 C 1.52995 * 109.46981 * 215.10875 * 9 7 2 12 12 N 1.46903 * 109.47042 * 65.32835 * 11 9 7 13 13 C 1.50703 * 109.46642 * 95.11459 * 9 7 2 14 14 C 1.33990 * 126.91248 * 60.02291 * 13 9 7 15 15 O 1.34439 * 110.15646 * 179.97438 * 14 13 9 16 16 C 1.34854 * 110.89117 * 359.97438 * 15 14 13 17 17 C 1.38923 * 133.39212 * 180.02562 * 16 15 14 18 18 C 1.37811 * 119.97618 * 179.97438 * 17 16 15 19 19 C 1.38860 * 120.67433 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 119.87389 * 180.02562 * 19 18 17 21 21 C 1.37829 * 120.25150 * 0.02562 * 19 18 17 22 22 C 1.39425 * 119.58756 * 359.72929 * 21 19 18 23 23 H 0.97005 * 119.99907 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47568 * 305.32096 * 11 9 7 25 25 H 1.09012 * 109.46969 * 185.31931 * 11 9 7 26 26 H 1.00901 * 110.99973 * 56.04364 * 12 11 9 27 27 H 1.00897 * 111.00262 * 179.97438 * 12 11 9 28 28 H 1.08000 * 124.91950 * 359.97438 * 14 13 9 29 29 H 1.08005 * 120.01275 * 359.96453 * 17 16 15 30 30 H 1.07996 * 119.66038 * 180.02562 * 18 17 16 31 31 H 1.07994 * 120.20393 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1963 0.0888 9 6 1.2560 -2.4962 -0.1256 10 1 0.2344 -2.3637 0.2304 11 6 1.9538 -3.5681 0.7139 12 7 1.8645 -3.2113 2.1362 13 6 1.2329 -2.9255 -1.5700 14 6 2.2914 -3.1853 -2.3493 15 8 1.8842 -3.5415 -3.5800 16 6 0.5383 -3.5317 -3.6629 17 6 -0.3570 -3.8142 -4.6869 18 6 -1.7131 -3.7133 -4.4633 19 6 -2.1995 -3.3300 -3.2205 20 17 -3.9120 -3.2102 -2.9616 21 6 -1.3280 -3.0443 -2.1917 22 6 0.0460 -3.1479 -2.4046 23 1 -0.4850 0.8401 0.0004 24 1 3.0016 -3.6341 0.4210 25 1 1.4693 -4.5307 0.5497 26 1 0.9040 -3.0809 2.4166 27 1 2.3181 -3.9046 2.7121 28 1 3.3223 -3.1184 -2.0343 29 1 0.0097 -4.1128 -5.6580 30 1 -2.4045 -3.9345 -5.2629 31 1 -1.7072 -2.7467 -1.2253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259642734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = -3.170106 kcal Electronic energy + Delta-G solvation = -17532.231921 eV Core-core repulsion = 14611.745229 eV Total energy + Delta-G solvation = -2920.486692 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.24683 -38.99685 -37.31763 -37.15018 -34.18639 -33.59991 -31.31169 -30.64588 -28.88045 -26.11999 -24.34754 -23.30319 -22.96189 -20.64876 -18.72758 -18.24572 -17.69055 -16.99140 -16.93120 -16.56304 -16.03835 -15.28526 -15.23373 -14.88400 -14.57861 -14.14205 -14.03207 -13.67061 -13.37080 -13.05608 -12.67577 -12.59421 -12.43371 -12.29233 -12.14274 -11.80412 -11.62571 -11.00506 -10.63479 -10.50837 -9.41010 -9.26556 -8.91766 -8.04356 -6.08397 -0.01935 0.21208 1.12993 1.42622 1.43257 1.49561 1.66833 1.99775 2.47608 2.64641 3.27229 3.64717 3.75224 4.00095 4.11799 4.28965 4.39426 4.50861 4.63007 4.64835 4.78701 5.01400 5.10258 5.20541 5.26033 5.35762 5.54044 5.67935 5.73804 5.91333 6.24563 6.39057 6.54443 6.88872 7.01037 7.54276 9.03069 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.006969 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.100259 B = 4016.564620 C = 4364.682382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.484 4.484 8 H 0.053 0.947 9 C 0.096 3.904 10 H 0.032 0.968 11 C 0.089 3.911 12 N -0.842 5.842 13 C -0.138 4.138 14 C -0.021 4.021 15 O -0.200 6.200 16 C 0.031 3.969 17 C -0.092 4.092 18 C -0.085 4.085 19 C -0.062 4.062 20 Cl -0.066 7.066 21 C -0.065 4.065 22 C -0.136 4.136 23 H 0.255 0.745 24 H 0.063 0.937 25 H 0.006 0.994 26 H 0.335 0.665 27 H 0.340 0.660 28 H 0.225 0.775 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -9.333 -7.421 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.077 3.923 10 H 0.050 0.950 11 C -0.042 4.042 12 N -0.371 5.371 13 C -0.141 4.141 14 C -0.085 4.085 15 O -0.102 6.102 16 C -0.017 4.017 17 C -0.110 4.110 18 C -0.104 4.104 19 C -0.089 4.089 20 Cl -0.037 7.037 21 C -0.084 4.084 22 C -0.138 4.138 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.024 0.976 26 H 0.147 0.853 27 H 0.153 0.847 28 H 0.242 0.758 29 H 0.191 0.809 30 H 0.195 0.805 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.672 -8.621 -7.804 11.748 hybrid contribution -0.477 0.514 0.728 1.011 sum -2.149 -8.107 -7.075 10.973 Atomic orbital electron populations 1.70018 1.07006 1.26706 1.52175 1.25574 0.95454 1.01898 0.95195 0.85875 0.78518 0.80180 0.78618 1.20013 1.21868 1.19701 1.21016 0.92891 0.90495 1.47767 0.92873 1.17301 0.97220 0.92791 0.85031 0.94966 1.21691 0.99521 0.94173 0.88799 1.58426 1.22163 1.52965 1.03557 1.22071 0.90277 1.01724 0.99995 1.23913 1.00398 1.03510 0.80631 1.83936 1.19888 1.73235 1.33104 1.20151 0.82499 1.02819 0.96231 1.20169 0.89816 1.03051 0.97995 1.21051 0.94729 0.99061 0.95522 1.20710 0.84757 1.07468 0.95920 1.98334 1.11463 1.96951 1.96981 1.20374 0.91024 0.97989 0.99015 1.20149 0.94264 1.04202 0.95144 0.93573 0.91892 0.97606 0.85264 0.84676 0.75850 0.80903 0.80486 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.39 12.77 21.45 0.27 -53.11 16 2 C 0.02 0.95 5.45 84.66 0.46 1.41 16 3 Si 0.94 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.48 -25.41 7.89 25.60 0.20 -25.21 16 8 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.10 4.55 2.48 -12.29 -0.03 4.52 16 10 H 0.03 1.76 7.23 -2.39 -0.02 1.74 16 11 C 0.09 3.51 6.01 86.30 0.52 4.03 16 12 N -0.84 -31.35 9.35 -186.71 -1.75 -33.09 16 13 C -0.14 -6.11 5.06 -18.59 -0.09 -6.20 16 14 C -0.02 -0.81 11.53 66.85 0.77 -0.04 16 15 O -0.20 -7.32 10.58 -9.29 -0.10 -7.42 16 16 C 0.03 1.13 7.41 22.98 0.17 1.30 16 17 C -0.09 -2.54 10.06 22.33 0.22 -2.31 16 18 C -0.09 -2.24 9.79 22.32 0.22 -2.02 16 19 C -0.06 -2.02 6.32 22.32 0.14 -1.88 16 20 Cl -0.07 -1.91 28.95 -2.72 -0.08 -1.99 16 21 C -0.07 -2.63 9.87 22.46 0.22 -2.41 16 22 C -0.14 -5.77 6.38 -20.21 -0.13 -5.90 16 23 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 26 H 0.34 12.66 8.99 -89.69 -0.81 11.85 16 27 H 0.34 10.08 9.08 -89.70 -0.81 9.27 16 28 H 0.23 7.12 8.06 -2.91 -0.02 7.10 16 29 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -63.00 290.72 2.61 -60.39 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.44 Total: 23.63 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 2.68 Total: -34.73 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.47 Total: -86.21 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.10 Total: -7.42 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -63.00 2.61 -60.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.218 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds