Wall clock time and date at job start Mon Mar 30 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00116 * 2 1 4 4 H 1.48505 * 109.47294 * 264.85634 * 3 2 1 5 5 H 1.48509 * 109.47187 * 24.85589 * 3 2 1 6 6 H 1.48493 * 109.47019 * 144.85407 * 3 2 1 7 7 C 1.37877 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00456 * 4.79413 * 7 2 1 9 9 C 1.50710 * 119.99428 * 184.79384 * 7 2 1 10 10 H 1.08991 * 109.46977 * 335.03857 * 9 7 2 11 11 C 1.53000 * 109.46886 * 95.04065 * 9 7 2 12 12 N 1.46898 * 109.47020 * 185.47748 * 11 9 7 13 13 C 1.50700 * 109.46762 * 215.03689 * 9 7 2 14 14 C 1.33999 * 126.90870 * 299.94471 * 13 9 7 15 15 O 1.34443 * 110.15307 * 180.02562 * 14 13 9 16 16 C 1.34852 * 110.89029 * 0.02562 * 15 14 13 17 17 C 1.38929 * 133.39786 * 180.32664 * 16 15 14 18 18 C 1.37809 * 119.97673 * 180.16999 * 17 16 15 19 19 C 1.38871 * 120.67828 * 359.48318 * 18 17 16 20 20 Cl 1.73595 * 119.87371 * 180.26118 * 19 18 17 21 21 C 1.37820 * 120.24441 * 0.24248 * 19 18 17 22 22 C 1.39423 * 119.59085 * 0.02562 * 21 19 18 23 23 H 0.96998 * 119.99897 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46888 * 305.47138 * 11 9 7 25 25 H 1.08998 * 109.47630 * 65.47327 * 11 9 7 26 26 H 1.00901 * 110.99952 * 179.97438 * 12 11 9 27 27 H 1.00899 * 110.99650 * 303.94918 * 12 11 9 28 28 H 1.07999 * 124.91792 * 0.04869 * 14 13 9 29 29 H 1.08003 * 120.01030 * 359.92953 * 17 16 15 30 30 H 1.08003 * 119.66333 * 179.76738 * 18 17 16 31 31 H 1.07997 * 120.19970 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6055 1.9837 -1.3945 5 1 1.3965 2.6817 0.5885 6 1 3.4881 1.4739 0.8059 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0791 9 6 3.5076 -1.1964 0.1085 10 1 3.8999 -0.2479 -0.2579 11 6 3.9124 -1.3845 1.5720 12 7 5.3704 -1.2559 1.6971 13 6 4.0694 -2.3251 -0.7171 14 6 3.8198 -3.6331 -0.5676 15 8 4.4989 -4.3421 -1.4861 16 6 5.2257 -3.5296 -2.2798 17 6 6.0738 -3.7560 -3.3567 18 6 6.6933 -2.6946 -3.9803 19 6 6.4714 -1.3927 -3.5507 20 17 7.2574 -0.0708 -4.3558 21 6 5.6293 -1.1464 -2.4879 22 6 5.0013 -2.2127 -1.8456 23 1 -0.4850 0.8400 0.0004 24 1 3.4268 -0.6242 2.1838 25 1 3.6046 -2.3740 1.9099 26 1 5.6631 -1.3758 2.6553 27 1 5.8443 -1.9075 1.0898 28 1 3.1674 -4.0563 0.1819 29 1 6.2506 -4.7637 -3.7025 30 1 7.3545 -2.8767 -4.8145 31 1 5.4576 -0.1338 -2.1542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259642739.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:42 Heat of formation + Delta-G solvation = 13.082354 kcal Electronic energy + Delta-G solvation = -17571.777515 eV Core-core repulsion = 14651.995583 eV Total energy + Delta-G solvation = -2919.781932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06602 -37.88262 -36.08672 -35.93791 -32.48310 -32.17466 -30.13184 -29.50090 -27.95336 -23.77256 -23.20142 -22.13444 -21.85727 -18.98202 -17.48092 -16.75856 -16.49048 -15.87195 -15.76029 -15.21476 -14.23206 -14.04202 -13.88216 -13.66247 -13.07180 -13.03655 -12.60242 -12.50246 -12.37946 -11.44131 -11.21726 -11.06550 -10.99909 -10.85513 -10.65944 -10.21882 -9.86203 -9.58164 -9.24965 -8.65176 -8.25843 -8.07987 -7.65983 -6.19616 -4.22044 1.11001 1.36852 2.23984 2.88896 3.17593 3.27239 3.35356 3.42198 3.80773 4.35098 4.75851 4.86215 5.05867 5.18873 5.35009 5.38945 5.50109 5.69152 5.89820 5.95016 6.19564 6.25200 6.30931 6.40146 6.50951 6.66266 6.82769 6.92579 7.24969 7.51834 7.55933 7.78319 7.98260 8.37264 8.82907 9.41544 10.92313 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.007554 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.730464 B = 3705.708370 C = 4443.732160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.867 3.133 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.078 3.922 10 H 0.051 0.949 11 C 0.070 3.930 12 N -0.856 5.856 13 C -0.111 4.111 14 C -0.020 4.020 15 O -0.198 6.198 16 C 0.051 3.949 17 C -0.100 4.100 18 C -0.094 4.094 19 C -0.060 4.060 20 Cl -0.077 7.077 21 C -0.048 4.048 22 C -0.110 4.110 23 H 0.266 0.734 24 H 0.069 0.931 25 H 0.017 0.983 26 H 0.326 0.674 27 H 0.331 0.669 28 H 0.205 0.795 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.075 -5.265 -4.174 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.552 4.552 8 H 0.094 0.906 9 C 0.058 3.942 10 H 0.069 0.931 11 C -0.060 4.060 12 N -0.384 5.384 13 C -0.112 4.112 14 C -0.083 4.083 15 O -0.100 6.100 16 C 0.003 3.997 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.087 4.087 20 Cl -0.048 7.048 21 C -0.067 4.067 22 C -0.111 4.111 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.036 0.964 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.222 0.778 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.832 -4.559 -4.530 14.351 hybrid contribution 0.159 0.190 0.259 0.358 sum 12.990 -4.369 -4.271 14.356 Atomic orbital electron populations 1.69886 1.06337 1.27333 1.49332 1.25032 0.94726 0.99045 0.93781 0.86973 0.80848 0.83444 0.79368 1.19941 1.21446 1.17714 1.20855 0.87761 0.94907 1.51701 0.90617 1.17804 0.95889 0.91504 0.88980 0.93106 1.22272 0.85551 0.98735 0.99472 1.58912 1.08079 1.60297 1.11121 1.21696 0.96766 0.95980 0.96758 1.23672 0.99237 0.90775 0.94650 1.83981 1.50906 1.36393 1.38678 1.19677 0.96468 0.88762 0.94786 1.19688 0.97945 0.99730 0.94538 1.20614 1.00533 0.89724 1.00413 1.20524 1.01251 0.88783 0.98122 1.98344 1.79653 1.47725 1.79096 1.20413 0.93800 0.99446 0.93023 1.19895 1.00049 0.92714 0.98429 0.92378 0.91248 0.96447 0.86309 0.85708 0.77844 0.84688 0.84363 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.97 26.99 -169.99 -4.59 16.38 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.25 -5.94 6.82 56.52 0.39 -5.56 16 7 C -0.51 -13.57 8.74 -34.44 -0.30 -13.87 16 8 H 0.08 2.14 7.95 -52.49 -0.42 1.73 16 9 C 0.08 1.73 2.04 -92.92 -0.19 1.54 16 10 H 0.05 1.20 5.29 -51.93 -0.27 0.93 16 11 C 0.07 1.39 6.17 -3.82 -0.02 1.36 16 12 N -0.86 -14.61 9.62 -10.37 -0.10 -14.71 16 13 C -0.11 -2.20 4.11 -102.66 -0.42 -2.63 16 14 C -0.02 -0.36 11.26 29.24 0.33 -0.03 16 15 O -0.20 -3.42 10.58 3.80 0.04 -3.38 16 16 C 0.05 0.87 7.41 -38.49 -0.29 0.58 16 17 C -0.10 -1.36 10.06 -39.48 -0.40 -1.76 16 18 C -0.09 -1.21 9.79 -39.50 -0.39 -1.60 16 19 C -0.06 -0.90 6.32 -39.50 -0.25 -1.15 16 20 Cl -0.08 -1.04 28.95 -51.86 -1.50 -2.54 16 21 C -0.05 -0.84 9.87 -39.29 -0.39 -1.22 16 22 C -0.11 -2.04 6.38 -105.16 -0.67 -2.71 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.02 0.32 7.88 -51.93 -0.41 -0.09 16 26 H 0.33 4.68 9.08 -39.29 -0.36 4.32 16 27 H 0.33 5.43 8.09 -39.29 -0.32 5.11 16 28 H 0.21 3.23 8.06 -52.49 -0.42 2.80 16 29 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 30 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 31 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 285.74 15.07 4.31 4.31 Total: -1.00 -29.16 285.74 -7.19 -36.36 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.04 Total: 8.52 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -3.08 Total: -19.44 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.67 Total: -40.21 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.59 Total: 16.38 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.16 -7.19 -36.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642739.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.439 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds