Wall clock time and date at job start Mon Mar 30 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00116 * 2 1 4 4 H 1.48505 * 109.47294 * 264.85634 * 3 2 1 5 5 H 1.48509 * 109.47187 * 24.85589 * 3 2 1 6 6 H 1.48493 * 109.47019 * 144.85407 * 3 2 1 7 7 C 1.37877 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00456 * 4.79413 * 7 2 1 9 9 C 1.50710 * 119.99428 * 184.79384 * 7 2 1 10 10 H 1.08991 * 109.46977 * 335.03857 * 9 7 2 11 11 C 1.53000 * 109.46886 * 95.04065 * 9 7 2 12 12 N 1.46898 * 109.47020 * 185.47748 * 11 9 7 13 13 C 1.50700 * 109.46762 * 215.03689 * 9 7 2 14 14 C 1.33999 * 126.90870 * 299.94471 * 13 9 7 15 15 O 1.34443 * 110.15307 * 180.02562 * 14 13 9 16 16 C 1.34852 * 110.89029 * 0.02562 * 15 14 13 17 17 C 1.38929 * 133.39786 * 180.32664 * 16 15 14 18 18 C 1.37809 * 119.97673 * 180.16999 * 17 16 15 19 19 C 1.38871 * 120.67828 * 359.48318 * 18 17 16 20 20 Cl 1.73595 * 119.87371 * 180.26118 * 19 18 17 21 21 C 1.37820 * 120.24441 * 0.24248 * 19 18 17 22 22 C 1.39423 * 119.59085 * 0.02562 * 21 19 18 23 23 H 0.96998 * 119.99897 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46888 * 305.47138 * 11 9 7 25 25 H 1.08998 * 109.47630 * 65.47327 * 11 9 7 26 26 H 1.00901 * 110.99952 * 179.97438 * 12 11 9 27 27 H 1.00899 * 110.99650 * 303.94918 * 12 11 9 28 28 H 1.07999 * 124.91792 * 0.04869 * 14 13 9 29 29 H 1.08003 * 120.01030 * 359.92953 * 17 16 15 30 30 H 1.08003 * 119.66333 * 179.76738 * 18 17 16 31 31 H 1.07997 * 120.19970 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6055 1.9837 -1.3945 5 1 1.3965 2.6817 0.5885 6 1 3.4881 1.4739 0.8059 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0791 9 6 3.5076 -1.1964 0.1085 10 1 3.8999 -0.2479 -0.2579 11 6 3.9124 -1.3845 1.5720 12 7 5.3704 -1.2559 1.6971 13 6 4.0694 -2.3251 -0.7171 14 6 3.8198 -3.6331 -0.5676 15 8 4.4989 -4.3421 -1.4861 16 6 5.2257 -3.5296 -2.2798 17 6 6.0738 -3.7560 -3.3567 18 6 6.6933 -2.6946 -3.9803 19 6 6.4714 -1.3927 -3.5507 20 17 7.2574 -0.0708 -4.3558 21 6 5.6293 -1.1464 -2.4879 22 6 5.0013 -2.2127 -1.8456 23 1 -0.4850 0.8400 0.0004 24 1 3.4268 -0.6242 2.1838 25 1 3.6046 -2.3740 1.9099 26 1 5.6631 -1.3758 2.6553 27 1 5.8443 -1.9075 1.0898 28 1 3.1674 -4.0563 0.1819 29 1 6.2506 -4.7637 -3.7025 30 1 7.3545 -2.8767 -4.8145 31 1 5.4576 -0.1338 -2.1542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259642739.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:42 Heat of formation + Delta-G solvation = -5.815929 kcal Electronic energy + Delta-G solvation = -17572.597006 eV Core-core repulsion = 14651.995583 eV Total energy + Delta-G solvation = -2920.601423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.38864 -39.06525 -37.59396 -37.19803 -34.44890 -33.57071 -31.47053 -30.84817 -29.51298 -25.65582 -24.44929 -23.50952 -23.23825 -20.46493 -19.23759 -18.27581 -17.89912 -17.21564 -17.03655 -16.69782 -15.98543 -15.45240 -15.19534 -15.07523 -14.75264 -14.33749 -14.18802 -13.97781 -13.55557 -13.19851 -12.84191 -12.62868 -12.40902 -12.18700 -12.06646 -11.83391 -11.65301 -11.40815 -10.77608 -10.73972 -9.52026 -9.46362 -9.02701 -8.32969 -6.36987 -0.10515 0.15506 1.09399 1.31683 1.36015 1.47837 1.50434 1.89303 2.32059 2.57096 3.03416 3.52467 3.62574 3.91063 3.98219 4.20439 4.31806 4.36149 4.46481 4.59599 4.68347 4.83540 4.99754 5.15861 5.20431 5.24108 5.31622 5.50329 5.58995 5.64889 6.14184 6.22424 6.39090 6.66317 6.75966 7.29172 8.82560 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.007554 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.730464 B = 3705.708370 C = 4443.732160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.508 4.508 8 H 0.045 0.955 9 C 0.083 3.917 10 H 0.036 0.964 11 C 0.079 3.921 12 N -0.853 5.853 13 C -0.144 4.144 14 C -0.009 4.009 15 O -0.196 6.196 16 C 0.036 3.964 17 C -0.087 4.087 18 C -0.082 4.082 19 C -0.056 4.056 20 Cl -0.064 7.064 21 C -0.075 4.075 22 C -0.132 4.132 23 H 0.266 0.734 24 H 0.052 0.948 25 H 0.027 0.973 26 H 0.345 0.655 27 H 0.338 0.662 28 H 0.219 0.781 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -6.132 -5.301 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.750 3.250 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.063 3.937 10 H 0.054 0.946 11 C -0.052 4.052 12 N -0.384 5.384 13 C -0.145 4.145 14 C -0.072 4.072 15 O -0.097 6.097 16 C -0.011 4.011 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.083 4.083 20 Cl -0.035 7.035 21 C -0.094 4.094 22 C -0.134 4.134 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.235 0.765 29 H 0.191 0.809 30 H 0.196 0.804 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.534 -5.434 -5.651 17.400 hybrid contribution -0.574 0.369 0.519 0.857 sum 14.960 -5.066 -5.132 16.607 Atomic orbital electron populations 1.70012 1.07906 1.28039 1.52043 1.25753 0.95305 1.02323 0.94104 0.86050 0.79910 0.79710 0.79342 1.19911 1.21302 1.16622 1.21125 0.90208 0.93480 1.49790 0.93657 1.17588 0.93040 0.92052 0.90977 0.94605 1.21932 0.87258 0.98677 0.97289 1.58749 1.06264 1.60687 1.12690 1.21483 0.98948 0.95952 0.98133 1.23872 0.98443 0.90357 0.94554 1.83979 1.50954 1.36199 1.38601 1.20117 0.97341 0.87887 0.95785 1.20199 0.95886 1.01808 0.92630 1.21086 0.99921 0.88350 1.00629 1.20710 1.00198 0.90195 0.97161 1.98352 1.79163 1.47413 1.78560 1.20400 0.95655 0.98631 0.94712 1.19968 1.00679 0.94109 0.98620 0.92448 0.92919 0.95494 0.84212 0.84948 0.76511 0.80891 0.80425 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 2 C 0.02 1.33 5.47 84.65 0.46 1.80 16 3 Si 0.93 44.37 26.99 68.60 1.85 46.22 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.24 -11.10 6.82 99.48 0.68 -10.42 16 7 C -0.51 -27.61 8.74 25.60 0.22 -27.39 16 8 H 0.05 2.68 7.95 -2.91 -0.02 2.65 16 9 C 0.08 3.73 2.04 -12.28 -0.03 3.71 16 10 H 0.04 1.71 5.29 -2.39 -0.01 1.70 16 11 C 0.08 3.12 6.17 86.30 0.53 3.65 16 12 N -0.85 -28.05 9.62 -186.72 -1.80 -29.85 16 13 C -0.14 -5.73 4.11 -18.59 -0.08 -5.81 16 14 C -0.01 -0.30 11.26 66.85 0.75 0.45 16 15 O -0.20 -6.45 10.58 -9.31 -0.10 -6.55 16 16 C 0.04 1.15 7.41 22.98 0.17 1.32 16 17 C -0.09 -2.01 10.06 22.33 0.22 -1.79 16 18 C -0.08 -1.77 9.79 22.32 0.22 -1.55 16 19 C -0.06 -1.53 6.32 22.32 0.14 -1.39 16 20 Cl -0.06 -1.56 28.95 -2.72 -0.08 -1.64 16 21 C -0.08 -2.56 9.87 22.46 0.22 -2.34 16 22 C -0.13 -4.85 6.38 -20.21 -0.13 -4.98 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.03 0.99 7.88 -2.39 -0.02 0.98 16 26 H 0.34 9.25 9.08 -89.69 -0.81 8.43 16 27 H 0.34 10.63 8.09 -89.69 -0.73 9.91 16 28 H 0.22 6.80 8.06 -2.91 -0.02 6.78 16 29 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -64.54 285.74 2.51 -62.04 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.39 Total: 21.14 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 2.72 Total: -34.30 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.50 Total: -86.89 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.10 Total: -6.55 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.85 Total: 46.22 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -64.54 2.51 -62.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642739.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.219 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds