Wall clock time and date at job start Mon Mar 30 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48491 * 109.47313 * 239.99794 * 3 2 1 5 5 H 1.48502 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47098 * 119.99571 * 3 2 1 7 7 C 1.37876 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00280 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.83188 * 57.07864 * 9 7 2 11 11 C 1.54263 * 108.87202 * 298.54724 * 9 7 2 12 12 S 1.83954 * 102.58138 * 263.71031 * 11 9 7 13 13 C 1.83954 * 94.80764 * 325.50221 * 12 11 9 14 14 H 1.09002 * 110.78657 * 276.22271 * 13 12 11 15 15 C 1.50697 * 110.78602 * 152.95867 * 13 12 11 16 16 C 1.38267 * 119.94428 * 303.73905 * 15 13 12 17 17 C 1.38147 * 120.05320 * 179.72335 * 16 15 13 18 18 C 1.38729 * 119.94429 * 0.57896 * 17 16 15 19 19 O 1.35903 * 120.05619 * 179.68295 * 18 17 16 20 20 C 1.38735 * 119.89021 * 359.69392 * 18 17 16 21 21 C 1.38146 * 119.94002 * 0.02562 * 20 18 17 22 22 C 1.52333 * 108.86954 * 175.47100 * 9 7 2 23 23 H 1.09001 * 108.87171 * 0.02562 * 22 9 7 24 24 N 1.46902 * 108.87010 * 241.64136 * 22 9 7 25 25 H 0.96993 * 119.99836 * 0.02562 * 1 2 3 26 26 H 1.08992 * 110.78496 * 145.43032 * 11 9 7 27 27 H 1.09010 * 110.78072 * 21.98151 * 11 9 7 28 28 H 1.07997 * 119.97106 * 359.97438 * 16 15 13 29 29 H 1.08008 * 120.02841 * 180.29655 * 17 16 15 30 30 H 0.96705 * 113.99691 * 270.01795 * 19 18 17 31 31 H 1.07999 * 120.02985 * 179.97438 * 20 18 17 32 32 H 1.07999 * 119.96850 * 179.97438 * 21 20 18 33 33 H 1.00895 * 111.00163 * 175.47275 * 24 22 9 34 34 H 1.00910 * 110.99545 * 299.42181 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5892 -2.5233 -0.8663 11 6 0.3979 -2.5828 1.2820 12 16 1.4675 -3.5649 2.4114 13 6 2.1724 -4.6186 1.0785 14 1 1.5090 -5.4539 0.8541 15 6 3.5438 -5.1148 1.4580 16 6 4.5370 -4.2119 1.7901 17 6 5.7934 -4.6645 2.1439 18 6 6.0616 -6.0256 2.1542 19 8 7.2986 -6.4730 2.4956 20 6 5.0650 -6.9292 1.8151 21 6 3.8086 -6.4718 1.4677 22 6 2.2491 -3.6442 -0.1150 23 1 3.2561 -3.2303 -0.1675 24 7 1.9795 -4.3875 -1.3531 25 1 -0.4849 0.8400 -0.0004 26 1 -0.5407 -3.1021 1.0890 27 1 0.2145 -1.5887 1.6900 28 1 4.3292 -3.1522 1.7768 29 1 6.5675 -3.9591 2.4078 30 1 7.9057 -6.5596 1.7479 31 1 5.2714 -7.9893 1.8220 32 1 3.0325 -7.1748 1.2033 33 1 2.6690 -5.1095 -1.4988 34 1 1.0473 -4.7736 -1.3473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:06 Heat of formation + Delta-G solvation = -21.360256 kcal Electronic energy + Delta-G solvation = -17786.124147 eV Core-core repulsion = 15002.725473 eV Total energy + Delta-G solvation = -2783.398675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73829 -37.51724 -36.08171 -33.07660 -30.91405 -30.76731 -30.03748 -26.30076 -25.40795 -23.24393 -22.55074 -21.31659 -19.08528 -18.38122 -16.91178 -16.27814 -15.78914 -15.37795 -14.88028 -14.81578 -14.38705 -14.11861 -13.79850 -13.33542 -12.92661 -12.39121 -12.36193 -12.32928 -11.78196 -11.65590 -11.17689 -10.85359 -10.73464 -10.65720 -10.42837 -10.24790 -9.87062 -9.25182 -9.12403 -8.88090 -8.61916 -8.37291 -7.93202 -6.86936 -6.11111 -4.14402 1.20319 1.46131 2.66401 3.28391 3.32777 3.34581 3.37304 3.79207 4.23508 4.37766 4.82424 4.98865 5.03653 5.12194 5.26208 5.33413 5.50655 5.59151 5.72199 5.88395 6.14286 6.18283 6.35047 6.41111 6.50271 6.51666 6.72103 6.80263 6.90211 7.33670 7.42611 7.62722 7.81528 7.84871 7.94971 8.25452 8.85108 9.49390 10.97203 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.006057 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.410123 B = 4622.011596 C = 5102.823635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.057 0.943 9 C 0.045 3.955 10 H 0.054 0.946 11 C -0.025 4.025 12 S -0.328 6.328 13 C -0.034 4.034 14 H 0.085 0.915 15 C -0.063 4.063 16 C -0.076 4.076 17 C -0.144 4.144 18 C 0.095 3.905 19 O -0.502 6.502 20 C -0.148 4.148 21 C -0.100 4.100 22 C 0.106 3.894 23 H 0.090 0.910 24 N -0.834 5.834 25 H 0.263 0.737 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.386 0.614 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.327 0.673 34 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -11.654 0.918 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.024 3.976 10 H 0.072 0.928 11 C -0.173 4.173 12 S -0.099 6.099 13 C -0.165 4.165 14 H 0.103 0.897 15 C -0.064 4.064 16 C -0.095 4.095 17 C -0.162 4.162 18 C 0.050 3.950 19 O -0.312 6.312 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.007 4.007 23 H 0.108 0.892 24 N -0.361 5.361 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.241 0.759 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.440 -10.740 2.320 13.270 hybrid contribution 0.273 0.010 -0.907 0.947 sum 7.713 -10.730 1.413 13.290 Atomic orbital electron populations 1.69900 1.05879 1.26990 1.50325 1.24950 0.94913 0.99225 0.95036 0.86619 0.79637 0.82909 0.78719 1.20206 1.21307 1.20137 1.21084 0.92673 0.89557 1.50332 0.92433 1.19145 0.92756 0.92212 0.93443 0.92793 1.24516 0.95947 1.00717 0.96082 1.87633 1.58246 1.45151 1.18887 1.23760 0.94553 1.00031 0.98127 0.89654 1.19517 0.94237 0.93126 0.99554 1.21159 0.91446 1.01109 0.95775 1.21422 0.98103 0.94756 1.01931 1.18470 0.85576 0.91400 0.99563 1.84820 1.21358 1.87968 1.37029 1.21262 0.93755 0.99603 1.02036 1.20866 0.96405 0.94723 0.99970 1.22580 1.02966 0.91698 0.83423 0.89196 1.59063 1.06752 1.32202 1.38093 0.92729 0.92849 0.86343 0.84109 0.85444 0.75862 0.85751 0.85963 0.86106 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 11.83 55.43 0.66 -23.69 16 2 C 0.06 1.59 5.03 -17.82 -0.09 1.50 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.50 -12.88 8.39 -34.44 -0.29 -13.16 16 8 H 0.06 1.49 7.20 -52.48 -0.38 1.11 16 9 C 0.04 1.03 2.31 -91.45 -0.21 0.82 16 10 H 0.05 1.38 7.77 -51.93 -0.40 0.98 16 11 C -0.02 -0.55 6.46 37.82 0.24 -0.31 16 12 S -0.33 -6.68 22.28 -107.50 -2.39 -9.08 16 13 C -0.03 -0.59 3.14 -27.22 -0.09 -0.67 16 14 H 0.09 1.35 7.81 -51.93 -0.41 0.95 16 15 C -0.06 -0.99 4.96 -104.60 -0.52 -1.51 16 16 C -0.08 -1.22 8.37 -39.60 -0.33 -1.55 16 17 C -0.14 -2.03 9.99 -39.43 -0.39 -2.42 16 18 C 0.09 1.24 6.70 -39.22 -0.26 0.98 16 19 O -0.50 -5.71 13.50 -19.43 -0.26 -5.97 16 20 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 21 C -0.10 -1.33 9.68 -39.61 -0.38 -1.72 16 22 C 0.11 2.02 2.89 -67.39 -0.19 1.83 16 23 H 0.09 1.86 5.82 -51.93 -0.30 1.55 16 24 N -0.83 -13.85 8.93 -4.39 -0.04 -13.89 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.12 3.03 6.35 -51.92 -0.33 2.70 16 28 H 0.14 2.49 7.71 -52.49 -0.40 2.08 16 29 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.39 2.44 9.06 45.56 0.41 2.86 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.39 7.98 -52.49 -0.42 0.97 16 33 H 0.33 4.62 9.04 -39.29 -0.36 4.27 16 34 H 0.33 5.11 8.94 -39.29 -0.35 4.75 16 LS Contribution 295.55 15.07 4.45 4.45 Total: -1.00 -28.71 295.55 -8.86 -37.56 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -3.34 Total: 13.29 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.91 Total: -18.46 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.62 Total: -37.58 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.26 Total: -5.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -2.39 Total: -9.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.71 -8.86 -37.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.203 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds