Wall clock time and date at job start Mon Mar 30 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48491 * 109.47313 * 239.99794 * 3 2 1 5 5 H 1.48502 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47098 * 119.99571 * 3 2 1 7 7 C 1.37876 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00280 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.83188 * 57.07864 * 9 7 2 11 11 C 1.54263 * 108.87202 * 298.54724 * 9 7 2 12 12 S 1.83954 * 102.58138 * 263.71031 * 11 9 7 13 13 C 1.83954 * 94.80764 * 325.50221 * 12 11 9 14 14 H 1.09002 * 110.78657 * 276.22271 * 13 12 11 15 15 C 1.50697 * 110.78602 * 152.95867 * 13 12 11 16 16 C 1.38267 * 119.94428 * 303.73905 * 15 13 12 17 17 C 1.38147 * 120.05320 * 179.72335 * 16 15 13 18 18 C 1.38729 * 119.94429 * 0.57896 * 17 16 15 19 19 O 1.35903 * 120.05619 * 179.68295 * 18 17 16 20 20 C 1.38735 * 119.89021 * 359.69392 * 18 17 16 21 21 C 1.38146 * 119.94002 * 0.02562 * 20 18 17 22 22 C 1.52333 * 108.86954 * 175.47100 * 9 7 2 23 23 H 1.09001 * 108.87171 * 0.02562 * 22 9 7 24 24 N 1.46902 * 108.87010 * 241.64136 * 22 9 7 25 25 H 0.96993 * 119.99836 * 0.02562 * 1 2 3 26 26 H 1.08992 * 110.78496 * 145.43032 * 11 9 7 27 27 H 1.09010 * 110.78072 * 21.98151 * 11 9 7 28 28 H 1.07997 * 119.97106 * 359.97438 * 16 15 13 29 29 H 1.08008 * 120.02841 * 180.29655 * 17 16 15 30 30 H 0.96705 * 113.99691 * 270.01795 * 19 18 17 31 31 H 1.07999 * 120.02985 * 179.97438 * 20 18 17 32 32 H 1.07999 * 119.96850 * 179.97438 * 21 20 18 33 33 H 1.00895 * 111.00163 * 175.47275 * 24 22 9 34 34 H 1.00910 * 110.99545 * 299.42181 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5892 -2.5233 -0.8663 11 6 0.3979 -2.5828 1.2820 12 16 1.4675 -3.5649 2.4114 13 6 2.1724 -4.6186 1.0785 14 1 1.5090 -5.4539 0.8541 15 6 3.5438 -5.1148 1.4580 16 6 4.5370 -4.2119 1.7901 17 6 5.7934 -4.6645 2.1439 18 6 6.0616 -6.0256 2.1542 19 8 7.2986 -6.4730 2.4956 20 6 5.0650 -6.9292 1.8151 21 6 3.8086 -6.4718 1.4677 22 6 2.2491 -3.6442 -0.1150 23 1 3.2561 -3.2303 -0.1675 24 7 1.9795 -4.3875 -1.3531 25 1 -0.4849 0.8400 -0.0004 26 1 -0.5407 -3.1021 1.0890 27 1 0.2145 -1.5887 1.6900 28 1 4.3292 -3.1522 1.7768 29 1 6.5675 -3.9591 2.4078 30 1 7.9057 -6.5596 1.7479 31 1 5.2714 -7.9893 1.8220 32 1 3.0325 -7.1748 1.2033 33 1 2.6690 -5.1095 -1.4988 34 1 1.0473 -4.7736 -1.3473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:05 Heat of formation + Delta-G solvation = -41.156975 kcal Electronic energy + Delta-G solvation = -17786.982598 eV Core-core repulsion = 15002.725473 eV Total energy + Delta-G solvation = -2784.257125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80969 -38.81293 -37.35981 -34.89691 -32.07539 -31.96039 -31.74227 -27.69611 -27.25652 -24.78793 -23.71163 -22.55591 -20.70158 -19.33824 -18.71685 -17.76454 -17.07289 -16.63914 -16.30773 -16.20424 -15.96135 -15.57895 -14.98334 -14.71218 -14.35313 -14.03212 -13.80209 -13.65844 -13.30647 -12.87130 -12.84656 -12.57529 -12.45926 -12.24951 -12.02586 -11.66307 -11.38220 -11.07807 -10.97100 -10.41502 -9.94739 -9.77099 -9.23395 -8.50171 -8.14406 -6.22723 0.08116 0.40028 1.22731 1.41925 1.42701 1.49504 1.60384 2.42592 2.72346 3.16155 3.30187 3.59251 3.76290 3.84603 4.00032 4.10291 4.21572 4.44924 4.50582 4.58363 4.63056 4.77093 4.90975 5.00026 5.08976 5.31530 5.44867 5.53242 5.57681 5.64200 5.81557 5.87132 6.28565 6.34963 6.71769 6.82469 6.87675 7.43570 8.92865 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.006057 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.410123 B = 4622.011596 C = 5102.823635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.051 0.949 9 C 0.046 3.954 10 H 0.026 0.974 11 C -0.020 4.020 12 S -0.346 6.346 13 C -0.011 4.011 14 H 0.107 0.893 15 C -0.084 4.084 16 C -0.092 4.092 17 C -0.154 4.154 18 C 0.105 3.895 19 O -0.507 6.507 20 C -0.144 4.144 21 C -0.090 4.090 22 C 0.118 3.882 23 H 0.073 0.927 24 N -0.836 5.836 25 H 0.262 0.738 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.411 0.589 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.346 0.654 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 -13.965 0.850 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.026 3.974 10 H 0.043 0.957 11 C -0.169 4.169 12 S -0.117 6.117 13 C -0.141 4.141 14 H 0.125 0.875 15 C -0.086 4.086 16 C -0.111 4.111 17 C -0.172 4.172 18 C 0.060 3.940 19 O -0.321 6.321 20 C -0.162 4.162 21 C -0.110 4.110 22 C 0.005 3.995 23 H 0.091 0.909 24 N -0.366 5.366 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.270 0.730 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.044 -13.068 2.234 16.049 hybrid contribution -0.087 0.628 -0.883 1.088 sum 8.957 -12.440 1.350 15.388 Atomic orbital electron populations 1.70009 1.06914 1.27393 1.51255 1.25612 0.95629 1.02046 0.95033 0.85773 0.78568 0.79670 0.78692 1.19729 1.21038 1.19989 1.21393 0.92584 0.91097 1.49817 0.93112 1.19078 0.92830 0.93028 0.92452 0.95654 1.24158 0.96674 0.99604 0.96423 1.87621 1.58131 1.45768 1.20176 1.23729 0.95982 0.99231 0.95144 0.87476 1.19428 0.93045 0.94336 1.01792 1.21014 0.92777 0.99972 0.97375 1.21524 0.97549 0.95915 1.02220 1.18546 0.86569 0.90935 0.97985 1.84760 1.21079 1.87596 1.38646 1.21572 0.92948 1.00981 1.00715 1.21108 0.97496 0.93756 0.98646 1.22126 1.00482 0.91463 0.85476 0.90923 1.58910 1.07989 1.33109 1.36633 0.92931 0.92279 0.89758 0.86882 0.84628 0.73001 0.82821 0.83382 0.84039 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.54 11.83 21.45 0.25 -51.29 16 2 C 0.02 0.85 5.03 84.65 0.43 1.28 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.51 -27.20 8.39 25.60 0.21 -26.99 16 8 H 0.05 2.71 7.20 -2.91 -0.02 2.69 16 9 C 0.05 2.20 2.31 -11.33 -0.03 2.17 16 10 H 0.03 1.34 7.77 -2.39 -0.02 1.32 16 11 C -0.02 -0.93 6.46 72.41 0.47 -0.47 16 12 S -0.35 -14.18 22.28 -56.49 -1.26 -15.44 16 13 C -0.01 -0.36 3.14 30.28 0.09 -0.26 16 14 H 0.11 3.10 7.81 -2.39 -0.02 3.08 16 15 C -0.08 -2.51 4.96 -19.85 -0.10 -2.60 16 16 C -0.09 -2.91 8.37 22.26 0.19 -2.72 16 17 C -0.15 -4.11 9.99 22.37 0.22 -3.89 16 18 C 0.10 2.42 6.70 22.51 0.15 2.57 16 19 O -0.51 -9.67 13.50 -92.46 -1.25 -10.92 16 20 C -0.14 -3.00 9.99 22.37 0.22 -2.78 16 21 C -0.09 -2.09 9.68 22.25 0.22 -1.87 16 22 C 0.12 4.48 2.89 45.12 0.13 4.61 16 23 H 0.07 3.04 5.82 -2.39 -0.01 3.03 16 24 N -0.84 -26.76 8.93 -167.81 -1.50 -28.26 16 25 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.08 4.51 6.35 -2.38 -0.02 4.50 16 28 H 0.11 4.16 7.71 -2.91 -0.02 4.13 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.41 3.58 9.06 -74.05 -0.67 2.91 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.15 2.64 7.98 -2.91 -0.02 2.62 16 33 H 0.35 8.97 9.04 -89.70 -0.81 8.16 16 34 H 0.34 9.99 8.94 -89.69 -0.80 9.18 16 Total: -1.00 -62.93 295.55 -0.65 -63.58 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -1.13 Total: 27.77 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 2.21 Total: -30.96 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -1.25 Total: -79.55 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.25 Total: -10.92 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -14.18 SS G_CDS: -1.26 Total: -15.44 kcal Total: -62.93 -0.65 -63.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.427 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds