Wall clock time and date at job start Mon Mar 30 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48499 * 109.47170 * 270.00223 * 3 2 1 5 5 H 1.48497 * 109.47054 * 30.00357 * 3 2 1 6 6 H 1.48501 * 109.47003 * 150.00003 * 3 2 1 7 7 C 1.37880 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00279 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.60070 * 335.47008 * 9 7 2 11 11 C 1.55149 * 109.60766 * 215.14760 * 9 7 2 12 12 S 1.83985 * 100.91143 * 198.62788 * 11 9 7 13 13 C 1.83398 * 95.85172 * 35.35246 * 12 11 9 14 14 H 1.08993 * 110.33956 * 99.12015 * 13 12 11 15 15 C 1.50699 * 110.33804 * 221.27202 * 13 12 11 16 16 C 1.38260 * 119.94586 * 56.85908 * 15 13 12 17 17 C 1.38150 * 120.05515 * 179.72558 * 16 15 13 18 18 C 1.38723 * 119.94263 * 0.51693 * 17 16 15 19 19 O 1.35903 * 120.05613 * 179.72914 * 18 17 16 20 20 C 1.38731 * 119.89164 * 359.74980 * 18 17 16 21 21 C 1.38146 * 119.94077 * 0.02562 * 20 18 17 22 22 C 1.52933 * 109.60515 * 95.60769 * 9 7 2 23 23 H 1.09003 * 108.89575 * 270.83006 * 22 9 7 24 24 N 1.46906 * 108.88760 * 29.24180 * 22 9 7 25 25 H 0.96995 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.09006 * 111.13079 * 80.71942 * 11 9 7 27 27 H 1.08996 * 111.16728 * 316.55821 * 11 9 7 28 28 H 1.07998 * 119.97320 * 359.96563 * 16 15 13 29 29 H 1.08004 * 120.02768 * 180.28963 * 17 16 15 30 30 H 0.96699 * 114.00251 * 270.01932 * 19 18 17 31 31 H 1.07996 * 120.03131 * 180.02562 * 20 18 17 32 32 H 1.08001 * 119.96893 * 179.97438 * 21 20 18 33 33 H 1.00896 * 111.00233 * 176.33307 * 24 22 9 34 34 H 1.00903 * 110.99277 * 300.28234 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.2593 -2.3488 0.4262 11 6 2.0259 -3.5478 0.8403 12 16 1.2741 -5.1108 0.2265 13 6 1.0609 -4.5481 -1.5059 14 1 1.8701 -4.9275 -2.1298 15 6 -0.2714 -5.0024 -2.0440 16 6 -1.4369 -4.6489 -1.3896 17 6 -2.6598 -5.0594 -1.8840 18 6 -2.7172 -5.8359 -3.0322 19 8 -3.9186 -6.2456 -3.5175 20 6 -1.5460 -6.1939 -3.6839 21 6 -0.3258 -5.7770 -3.1880 22 6 1.1158 -3.0136 -1.4344 23 1 0.2032 -2.6073 -1.8706 24 7 2.2645 -2.5419 -2.2192 25 1 -0.4849 0.8400 0.0004 26 1 1.8385 -3.4135 1.9057 27 1 3.0938 -3.5141 0.6244 28 1 -1.3915 -4.0481 -0.4933 29 1 -3.5702 -4.7791 -1.3751 30 1 -4.2159 -7.0957 -3.1654 31 1 -1.5880 -6.7980 -4.5781 32 1 0.5862 -6.0558 -3.6948 33 1 2.2386 -2.9129 -3.1571 34 1 2.3053 -1.5337 -2.2302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:07 Heat of formation + Delta-G solvation = -23.425327 kcal Electronic energy + Delta-G solvation = -17829.756643 eV Core-core repulsion = 15046.268420 eV Total energy + Delta-G solvation = -2783.488223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63836 -37.37837 -35.97798 -32.66550 -30.83550 -30.74526 -30.14123 -26.48854 -25.15699 -23.19493 -22.40571 -21.22926 -18.91414 -18.29844 -16.63593 -16.27597 -15.76614 -15.37373 -15.02229 -14.66791 -14.32315 -14.03295 -13.27208 -13.17354 -12.94742 -12.66181 -12.45629 -12.12646 -11.63342 -11.56245 -11.05900 -10.98610 -10.90769 -10.67262 -10.34631 -10.29477 -9.93014 -9.31252 -8.93443 -8.78753 -8.64188 -8.21389 -7.63205 -7.02485 -6.19135 -4.21362 1.30230 1.56401 2.66752 3.12101 3.22733 3.30001 3.33921 3.88017 4.30853 4.32122 4.91009 5.09834 5.10882 5.13797 5.41296 5.62091 5.73255 5.81205 5.92521 6.01175 6.13842 6.23072 6.24737 6.45877 6.56533 6.59976 6.69702 6.87129 6.99154 7.16650 7.51323 7.70581 7.74934 8.00586 8.34338 8.47661 8.88935 9.41200 10.89101 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.005960 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.446073 B = 4697.177770 C = 5180.461675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.495 4.495 8 H 0.065 0.935 9 C 0.043 3.957 10 H 0.070 0.930 11 C -0.037 4.037 12 S -0.341 6.341 13 C 0.010 3.990 14 H 0.097 0.903 15 C -0.068 4.068 16 C -0.070 4.070 17 C -0.145 4.145 18 C 0.093 3.907 19 O -0.502 6.502 20 C -0.150 4.150 21 C -0.098 4.098 22 C 0.103 3.897 23 H 0.037 0.963 24 N -0.833 5.833 25 H 0.263 0.737 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.385 0.615 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.309 0.691 34 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 -9.879 -4.903 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.535 4.535 8 H 0.083 0.917 9 C 0.023 3.977 10 H 0.088 0.912 11 C -0.184 4.184 12 S -0.111 6.111 13 C -0.119 4.119 14 H 0.115 0.885 15 C -0.070 4.070 16 C -0.090 4.090 17 C -0.163 4.163 18 C 0.049 3.951 19 O -0.311 6.311 20 C -0.168 4.168 21 C -0.118 4.118 22 C -0.010 4.010 23 H 0.055 0.945 24 N -0.365 5.365 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.240 0.760 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.771 -10.651 -4.057 11.729 hybrid contribution -0.098 1.951 -0.993 2.191 sum -2.870 -8.700 -5.050 10.461 Atomic orbital electron populations 1.69921 1.06000 1.27029 1.49757 1.25084 0.94906 0.99452 0.94793 0.86545 0.79924 0.83097 0.78203 1.20640 1.21310 1.19673 1.20918 0.93322 0.88994 1.50277 0.91705 1.19724 0.97732 0.92530 0.87734 0.91223 1.24669 1.01941 0.89730 1.02090 1.87327 1.82664 1.29414 1.11648 1.22687 0.95627 0.99270 0.94290 0.88469 1.19722 0.94439 0.97670 0.95156 1.21104 0.90798 0.97496 0.99564 1.21406 0.98563 1.00404 0.95944 1.18463 0.84543 0.98506 0.93604 1.84823 1.34555 1.42174 1.69594 1.21256 0.91852 1.02623 1.01098 1.20883 0.97392 0.97683 0.95866 1.22042 0.92070 0.87587 0.99255 0.94490 1.58982 1.45308 1.16770 1.15451 0.92683 0.89536 0.90157 0.84498 0.85510 0.75992 0.85796 0.85806 0.88108 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 12.79 55.43 0.71 -23.27 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.50 -12.27 6.14 -34.44 -0.21 -12.48 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.04 1.00 2.53 -90.67 -0.23 0.77 16 10 H 0.07 1.81 7.30 -51.93 -0.38 1.43 16 11 C -0.04 -0.76 6.85 38.29 0.26 -0.50 16 12 S -0.34 -6.58 22.20 -107.50 -2.39 -8.96 16 13 C 0.01 0.18 3.20 -27.51 -0.09 0.09 16 14 H 0.10 1.70 7.59 -51.93 -0.39 1.31 16 15 C -0.07 -1.15 4.73 -104.60 -0.49 -1.64 16 16 C -0.07 -1.21 8.58 -39.61 -0.34 -1.55 16 17 C -0.14 -2.20 9.99 -39.43 -0.39 -2.60 16 18 C 0.09 1.32 6.70 -39.22 -0.26 1.06 16 19 O -0.50 -6.13 13.50 -19.44 -0.26 -6.39 16 20 C -0.15 -2.03 9.99 -39.43 -0.39 -2.42 16 21 C -0.10 -1.43 9.67 -39.61 -0.38 -1.81 16 22 C 0.10 2.13 3.04 -67.37 -0.20 1.93 16 23 H 0.04 0.85 7.30 -51.93 -0.38 0.47 16 24 N -0.83 -16.19 8.62 -4.38 -0.04 -16.23 16 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 28 H 0.14 2.56 8.00 -52.49 -0.42 2.14 16 29 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.39 2.72 9.06 45.56 0.41 3.13 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.55 7.97 -52.49 -0.42 1.13 16 33 H 0.31 5.19 8.86 -39.29 -0.35 4.84 16 34 H 0.36 7.50 7.39 -39.29 -0.29 7.21 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -27.64 296.79 -8.81 -36.45 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -3.45 Total: 16.66 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.84 Total: -17.71 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.67 Total: -39.50 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.26 Total: -6.39 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -2.39 Total: -8.96 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.64 -8.81 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.025 kcal (2) G-P(sol) polarization free energy of solvation -27.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds