Wall clock time and date at job start Mon Mar 30 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48499 * 109.47170 * 270.00223 * 3 2 1 5 5 H 1.48497 * 109.47054 * 30.00357 * 3 2 1 6 6 H 1.48501 * 109.47003 * 150.00003 * 3 2 1 7 7 C 1.37880 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00279 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.60070 * 335.47008 * 9 7 2 11 11 C 1.55149 * 109.60766 * 215.14760 * 9 7 2 12 12 S 1.83985 * 100.91143 * 198.62788 * 11 9 7 13 13 C 1.83398 * 95.85172 * 35.35246 * 12 11 9 14 14 H 1.08993 * 110.33956 * 99.12015 * 13 12 11 15 15 C 1.50699 * 110.33804 * 221.27202 * 13 12 11 16 16 C 1.38260 * 119.94586 * 56.85908 * 15 13 12 17 17 C 1.38150 * 120.05515 * 179.72558 * 16 15 13 18 18 C 1.38723 * 119.94263 * 0.51693 * 17 16 15 19 19 O 1.35903 * 120.05613 * 179.72914 * 18 17 16 20 20 C 1.38731 * 119.89164 * 359.74980 * 18 17 16 21 21 C 1.38146 * 119.94077 * 0.02562 * 20 18 17 22 22 C 1.52933 * 109.60515 * 95.60769 * 9 7 2 23 23 H 1.09003 * 108.89575 * 270.83006 * 22 9 7 24 24 N 1.46906 * 108.88760 * 29.24180 * 22 9 7 25 25 H 0.96995 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.09006 * 111.13079 * 80.71942 * 11 9 7 27 27 H 1.08996 * 111.16728 * 316.55821 * 11 9 7 28 28 H 1.07998 * 119.97320 * 359.96563 * 16 15 13 29 29 H 1.08004 * 120.02768 * 180.28963 * 17 16 15 30 30 H 0.96699 * 114.00251 * 270.01932 * 19 18 17 31 31 H 1.07996 * 120.03131 * 180.02562 * 20 18 17 32 32 H 1.08001 * 119.96893 * 179.97438 * 21 20 18 33 33 H 1.00896 * 111.00233 * 176.33307 * 24 22 9 34 34 H 1.00903 * 110.99277 * 300.28234 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.2593 -2.3488 0.4262 11 6 2.0259 -3.5478 0.8403 12 16 1.2741 -5.1108 0.2265 13 6 1.0609 -4.5481 -1.5059 14 1 1.8701 -4.9275 -2.1298 15 6 -0.2714 -5.0024 -2.0440 16 6 -1.4369 -4.6489 -1.3896 17 6 -2.6598 -5.0594 -1.8840 18 6 -2.7172 -5.8359 -3.0322 19 8 -3.9186 -6.2456 -3.5175 20 6 -1.5460 -6.1939 -3.6839 21 6 -0.3258 -5.7770 -3.1880 22 6 1.1158 -3.0136 -1.4344 23 1 0.2032 -2.6073 -1.8706 24 7 2.2645 -2.5419 -2.2192 25 1 -0.4849 0.8400 0.0004 26 1 1.8385 -3.4135 1.9057 27 1 3.0938 -3.5141 0.6244 28 1 -1.3915 -4.0481 -0.4933 29 1 -3.5702 -4.7791 -1.3751 30 1 -4.2159 -7.0957 -3.1654 31 1 -1.5880 -6.7980 -4.5781 32 1 0.5862 -6.0558 -3.6948 33 1 2.2386 -2.9129 -3.1571 34 1 2.3053 -1.5337 -2.2302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:07 Heat of formation + Delta-G solvation = -41.809714 kcal Electronic energy + Delta-G solvation = -17830.553850 eV Core-core repulsion = 15046.268420 eV Total energy + Delta-G solvation = -2784.285430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79939 -38.75085 -37.35048 -34.49035 -32.25159 -31.96976 -31.77878 -27.97502 -26.95485 -24.74621 -23.64784 -22.54833 -20.61711 -19.34306 -18.50509 -17.73733 -17.14506 -16.63453 -16.49279 -16.23607 -15.94822 -15.35559 -14.85657 -14.41310 -14.35254 -14.29643 -13.84358 -13.64103 -13.20107 -12.93811 -12.84135 -12.50060 -12.42971 -12.37772 -12.06432 -11.59944 -11.39514 -11.22621 -10.65713 -10.59946 -9.95514 -9.44378 -9.27935 -8.58138 -8.15183 -6.22638 0.09763 0.39980 1.18329 1.40869 1.46059 1.53358 1.56516 2.43601 2.71685 3.15601 3.29118 3.57260 3.81506 4.00055 4.08340 4.26378 4.31508 4.40150 4.47158 4.50039 4.66755 4.84974 4.88220 4.94102 5.08214 5.32026 5.41193 5.43699 5.58873 5.65734 5.75283 5.87009 6.18069 6.57988 6.84134 6.87000 6.97620 7.42850 8.92756 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.005960 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.446073 B = 4697.177770 C = 5180.461675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.062 0.938 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.035 4.035 12 S -0.334 6.334 13 C 0.022 3.978 14 H 0.112 0.888 15 C -0.090 4.090 16 C -0.089 4.089 17 C -0.156 4.156 18 C 0.103 3.897 19 O -0.506 6.506 20 C -0.145 4.145 21 C -0.092 4.092 22 C 0.116 3.884 23 H 0.008 0.992 24 N -0.829 5.829 25 H 0.261 0.739 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.410 0.590 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.328 0.672 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -11.289 -6.627 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.050 0.950 11 C -0.183 4.183 12 S -0.104 6.104 13 C -0.106 4.106 14 H 0.130 0.870 15 C -0.092 4.092 16 C -0.108 4.108 17 C -0.174 4.174 18 C 0.058 3.942 19 O -0.320 6.320 20 C -0.163 4.163 21 C -0.112 4.112 22 C 0.002 3.998 23 H 0.026 0.974 24 N -0.361 5.361 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.153 0.847 30 H 0.269 0.731 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.140 0.860 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.310 -12.098 -5.785 13.607 hybrid contribution -0.341 2.282 -0.499 2.361 sum -2.651 -9.816 -6.284 11.953 Atomic orbital electron populations 1.70060 1.07416 1.27405 1.51496 1.25742 0.95442 1.02405 0.94801 0.85593 0.78647 0.79351 0.78287 1.19939 1.21868 1.19176 1.21090 0.93147 0.89870 1.49314 0.91957 1.19609 0.95818 0.93066 0.89525 0.95027 1.24468 1.01649 0.90339 1.01865 1.87263 1.82501 1.27825 1.12774 1.22624 0.97277 0.97089 0.93619 0.87023 1.19676 0.93243 0.99626 0.96699 1.20953 0.92204 0.98337 0.99339 1.21519 0.98091 1.00936 0.96893 1.18523 0.85590 0.97441 0.92603 1.84761 1.33634 1.44026 1.69533 1.21580 0.90975 1.02081 1.01653 1.21145 0.99039 0.96333 0.94685 1.21734 0.91123 0.89417 0.97484 0.97447 1.58915 1.44333 1.16139 1.16713 0.93024 0.89559 0.89973 0.87414 0.84744 0.73050 0.82678 0.83264 0.86048 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.58 12.79 21.45 0.27 -51.30 16 2 C 0.02 0.80 5.46 84.65 0.46 1.26 16 3 Si 0.95 41.48 29.54 68.60 2.03 43.51 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.49 -24.90 6.14 25.60 0.16 -24.74 16 8 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.04 1.92 2.53 -10.83 -0.03 1.89 16 10 H 0.03 1.73 7.30 -2.38 -0.02 1.71 16 11 C -0.04 -1.48 6.85 72.72 0.50 -0.99 16 12 S -0.33 -12.82 22.20 -56.49 -1.25 -14.07 16 13 C 0.02 0.80 3.20 30.09 0.10 0.90 16 14 H 0.11 3.67 7.59 -2.39 -0.02 3.65 16 15 C -0.09 -2.98 4.73 -19.85 -0.09 -3.07 16 16 C -0.09 -3.11 8.58 22.25 0.19 -2.92 16 17 C -0.16 -4.67 9.99 22.36 0.22 -4.44 16 18 C 0.10 2.67 6.70 22.50 0.15 2.82 16 19 O -0.51 -10.75 13.50 -92.46 -1.25 -12.00 16 20 C -0.14 -3.41 9.99 22.37 0.22 -3.19 16 21 C -0.09 -2.43 9.67 22.25 0.22 -2.21 16 22 C 0.12 4.83 3.04 45.13 0.14 4.97 16 23 H 0.01 0.36 7.30 -2.39 -0.02 0.34 16 24 N -0.83 -31.73 8.62 -167.76 -1.45 -33.18 16 25 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 26 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 27 H 0.08 3.40 8.10 -2.39 -0.02 3.38 16 28 H 0.11 4.33 8.00 -2.91 -0.02 4.31 16 29 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.41 4.34 9.06 -74.06 -0.67 3.67 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.15 3.12 7.97 -2.91 -0.02 3.10 16 33 H 0.33 10.49 8.86 -89.70 -0.79 9.70 16 34 H 0.35 14.60 7.39 -89.69 -0.66 13.93 16 Total: -1.00 -59.93 296.79 -0.40 -60.34 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.99 Total: 36.44 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 2.23 Total: -29.73 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.17 Total: -84.48 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.25 Total: -12.00 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -12.82 SS G_CDS: -1.25 Total: -14.07 kcal Total: -59.93 -0.40 -60.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.527 kcal (2) G-P(sol) polarization free energy of solvation -59.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds