Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48501 * 109.46755 * 239.99796 * 3 2 1 5 5 H 1.48497 * 109.46812 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47241 * 119.99837 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00375 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.59388 * 59.67485 * 9 7 2 11 11 C 1.55152 * 109.60087 * 299.53816 * 9 7 2 12 12 S 1.83989 * 100.90857 * 198.62504 * 11 9 7 13 13 C 1.83399 * 95.84898 * 35.35281 * 12 11 9 14 14 H 1.09005 * 110.42982 * 99.16619 * 13 12 11 15 15 C 1.50703 * 110.34209 * 221.37542 * 13 12 11 16 16 C 1.38268 * 119.94039 * 45.74771 * 15 13 12 17 17 C 1.38144 * 120.04913 * 179.72589 * 16 15 13 18 18 C 1.38730 * 119.95096 * 0.27582 * 17 16 15 19 19 O 1.35897 * 120.06097 * 179.97438 * 18 17 16 20 20 C 1.38740 * 119.88400 * 359.97438 * 18 17 16 21 21 C 1.38147 * 119.94448 * 0.02562 * 20 18 17 22 22 C 1.52935 * 109.60312 * 180.02562 * 9 7 2 23 23 H 1.08993 * 108.77715 * 29.31636 * 22 9 7 24 24 N 1.46899 * 108.88598 * 270.82255 * 22 9 7 25 25 H 0.96997 * 119.99790 * 359.97438 * 1 2 3 26 26 H 1.09001 * 111.13527 * 316.53787 * 11 9 7 27 27 H 1.09008 * 111.13271 * 80.67544 * 11 9 7 28 28 H 1.07991 * 119.97234 * 359.97438 * 16 15 13 29 29 H 1.08003 * 120.02351 * 180.29279 * 17 16 15 30 30 H 0.96703 * 114.00084 * 89.99370 * 19 18 17 31 31 H 1.08001 * 120.02443 * 179.97438 * 20 18 17 32 32 H 1.07993 * 119.97103 * 180.02562 * 21 20 18 33 33 H 1.00905 * 110.99619 * 183.36345 * 24 22 9 34 34 H 1.00894 * 111.00278 * 307.31634 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6189 -2.5572 -0.8844 11 6 0.3672 -2.5889 1.2737 12 16 0.0424 -4.3984 1.3452 13 6 1.6864 -4.9086 0.7125 14 1 2.3386 -5.1971 1.5369 15 6 1.5418 -6.0479 -0.2632 16 6 0.5726 -5.9944 -1.2478 17 6 0.4417 -7.0350 -2.1470 18 6 1.2799 -8.1369 -2.0579 19 8 1.1528 -9.1620 -2.9409 20 6 2.2482 -8.1904 -1.0657 21 6 2.3751 -7.1472 -0.1690 22 6 2.2422 -3.6639 0.0027 23 1 3.1548 -3.3475 0.5077 24 7 2.5655 -4.0144 -1.3867 25 1 -0.4850 0.8400 0.0004 26 1 0.9124 -2.2523 2.1556 27 1 -0.5588 -2.0274 1.1493 28 1 -0.0800 -5.1367 -1.3165 29 1 -0.3124 -6.9906 -2.9189 30 1 1.6921 -9.0641 -3.7376 31 1 2.9017 -9.0473 -0.9940 32 1 3.1289 -7.1883 0.6032 33 1 3.1764 -4.8166 -1.4245 34 1 1.7266 -4.1731 -1.9242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = -18.597296 kcal Electronic energy + Delta-G solvation = -17891.324641 eV Core-core repulsion = 15108.045777 eV Total energy + Delta-G solvation = -2783.278864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94023 -37.71501 -35.89405 -33.06400 -31.01830 -30.53575 -29.90586 -26.68504 -25.32101 -22.97203 -22.79676 -21.30639 -19.17681 -18.40747 -16.93553 -16.18553 -15.78751 -15.40245 -15.05585 -14.55419 -14.46604 -14.04674 -13.91591 -13.39045 -13.32545 -12.62328 -12.44024 -12.07925 -11.80950 -11.39963 -11.17851 -10.88148 -10.74550 -10.64798 -10.49566 -10.43050 -9.91206 -9.45516 -8.96340 -8.87857 -8.47835 -8.36694 -7.99286 -7.00372 -6.13400 -4.16821 1.16458 1.39329 2.59969 3.22975 3.30893 3.33204 3.37019 3.69197 4.18546 4.36053 4.77325 4.95143 4.99690 5.13376 5.32385 5.42343 5.48631 5.54452 5.69861 5.84008 6.06471 6.17142 6.28758 6.44489 6.51583 6.57227 6.61220 6.69740 6.83516 7.24435 7.51345 7.58923 7.83952 7.85168 8.03628 8.21275 8.84122 9.47288 10.94902 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.005344 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.568836 B = 5238.696444 C = 5494.092564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.058 3.942 10 H 0.045 0.955 11 C -0.022 4.022 12 S -0.357 6.357 13 C -0.035 4.035 14 H 0.090 0.910 15 C -0.066 4.066 16 C -0.082 4.082 17 C -0.143 4.143 18 C 0.096 3.904 19 O -0.502 6.502 20 C -0.146 4.146 21 C -0.099 4.099 22 C 0.101 3.899 23 H 0.083 0.917 24 N -0.825 5.825 25 H 0.263 0.737 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.128 0.872 30 H 0.387 0.613 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.326 0.674 34 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -12.632 -2.850 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.037 3.963 10 H 0.063 0.937 11 C -0.170 4.170 12 S -0.127 6.127 13 C -0.166 4.166 14 H 0.109 0.891 15 C -0.068 4.068 16 C -0.101 4.101 17 C -0.162 4.162 18 C 0.052 3.948 19 O -0.312 6.312 20 C -0.165 4.165 21 C -0.119 4.119 22 C -0.012 4.012 23 H 0.101 0.899 24 N -0.355 5.355 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.242 0.758 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.415 -12.601 -2.090 12.999 hybrid contribution 1.196 0.732 -0.330 1.441 sum 3.611 -11.868 -2.420 12.639 Atomic orbital electron populations 1.69882 1.05929 1.27052 1.50136 1.24986 0.94918 0.99334 0.94778 0.86556 0.79508 0.82676 0.78709 1.20149 1.21340 1.20254 1.20982 0.92924 0.89250 1.50820 0.92035 1.19476 0.91638 0.91890 0.93296 0.93713 1.24839 1.04860 0.85036 1.02292 1.87531 1.22580 1.15691 1.86926 1.23617 0.96446 0.97644 0.98918 0.89140 1.19612 0.96179 0.94794 0.96253 1.21191 0.97051 0.98644 0.93199 1.21425 1.00674 0.93100 1.00985 1.18476 0.95955 0.87789 0.92610 1.84819 1.69935 1.43261 1.33153 1.21295 0.98904 0.99308 0.96969 1.20895 0.99259 0.92760 0.99006 1.22287 1.00289 0.90791 0.87846 0.89931 1.58928 1.21202 1.43804 1.11556 0.92674 0.91002 0.86681 0.84249 0.85388 0.75757 0.85662 0.85716 0.86184 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 11.78 55.43 0.65 -23.49 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -12.85 8.44 -34.44 -0.29 -13.14 16 8 H 0.06 1.59 7.54 -52.48 -0.40 1.20 16 9 C 0.06 1.32 2.09 -90.66 -0.19 1.13 16 10 H 0.04 1.14 7.76 -51.93 -0.40 0.74 16 11 C -0.02 -0.50 6.18 38.30 0.24 -0.27 16 12 S -0.36 -7.04 21.58 -107.50 -2.32 -9.36 16 13 C -0.04 -0.61 3.52 -27.53 -0.10 -0.71 16 14 H 0.09 1.46 7.97 -51.93 -0.41 1.05 16 15 C -0.07 -1.00 3.25 -104.60 -0.34 -1.34 16 16 C -0.08 -1.23 6.96 -39.60 -0.28 -1.50 16 17 C -0.14 -1.89 9.99 -39.43 -0.39 -2.29 16 18 C 0.10 1.20 6.71 -39.21 -0.26 0.94 16 19 O -0.50 -5.45 13.50 -19.42 -0.26 -5.72 16 20 C -0.15 -1.75 9.99 -39.43 -0.39 -2.15 16 21 C -0.10 -1.28 9.56 -39.61 -0.38 -1.66 16 22 C 0.10 1.93 3.19 -67.39 -0.22 1.72 16 23 H 0.08 1.66 7.62 -51.93 -0.40 1.26 16 24 N -0.83 -14.52 8.59 -4.40 -0.04 -14.56 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.07 1.63 8.10 -51.93 -0.42 1.21 16 27 H 0.12 2.83 7.08 -51.92 -0.37 2.46 16 28 H 0.14 2.31 7.32 -52.49 -0.38 1.92 16 29 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.39 2.30 9.06 45.56 0.41 2.71 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.40 8.00 -52.49 -0.42 0.98 16 33 H 0.33 5.01 7.77 -39.29 -0.31 4.70 16 34 H 0.34 5.87 6.23 -39.29 -0.24 5.63 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -27.99 290.36 -8.63 -36.62 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -3.32 Total: 14.32 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.70 Total: -17.73 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.61 Total: -38.05 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.26 Total: -5.72 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -7.04 SS G_CDS: -2.32 Total: -9.36 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.99 -8.63 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.018 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds