Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48501 * 109.46755 * 239.99796 * 3 2 1 5 5 H 1.48497 * 109.46812 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47241 * 119.99837 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00375 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.59388 * 59.67485 * 9 7 2 11 11 C 1.55152 * 109.60087 * 299.53816 * 9 7 2 12 12 S 1.83989 * 100.90857 * 198.62504 * 11 9 7 13 13 C 1.83399 * 95.84898 * 35.35281 * 12 11 9 14 14 H 1.09005 * 110.42982 * 99.16619 * 13 12 11 15 15 C 1.50703 * 110.34209 * 221.37542 * 13 12 11 16 16 C 1.38268 * 119.94039 * 45.74771 * 15 13 12 17 17 C 1.38144 * 120.04913 * 179.72589 * 16 15 13 18 18 C 1.38730 * 119.95096 * 0.27582 * 17 16 15 19 19 O 1.35897 * 120.06097 * 179.97438 * 18 17 16 20 20 C 1.38740 * 119.88400 * 359.97438 * 18 17 16 21 21 C 1.38147 * 119.94448 * 0.02562 * 20 18 17 22 22 C 1.52935 * 109.60312 * 180.02562 * 9 7 2 23 23 H 1.08993 * 108.77715 * 29.31636 * 22 9 7 24 24 N 1.46899 * 108.88598 * 270.82255 * 22 9 7 25 25 H 0.96997 * 119.99790 * 359.97438 * 1 2 3 26 26 H 1.09001 * 111.13527 * 316.53787 * 11 9 7 27 27 H 1.09008 * 111.13271 * 80.67544 * 11 9 7 28 28 H 1.07991 * 119.97234 * 359.97438 * 16 15 13 29 29 H 1.08003 * 120.02351 * 180.29279 * 17 16 15 30 30 H 0.96703 * 114.00084 * 89.99370 * 19 18 17 31 31 H 1.08001 * 120.02443 * 179.97438 * 20 18 17 32 32 H 1.07993 * 119.97103 * 180.02562 * 21 20 18 33 33 H 1.00905 * 110.99619 * 183.36345 * 24 22 9 34 34 H 1.00894 * 111.00278 * 307.31634 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6189 -2.5572 -0.8844 11 6 0.3672 -2.5889 1.2737 12 16 0.0424 -4.3984 1.3452 13 6 1.6864 -4.9086 0.7125 14 1 2.3386 -5.1971 1.5369 15 6 1.5418 -6.0479 -0.2632 16 6 0.5726 -5.9944 -1.2478 17 6 0.4417 -7.0350 -2.1470 18 6 1.2799 -8.1369 -2.0579 19 8 1.1528 -9.1620 -2.9409 20 6 2.2482 -8.1904 -1.0657 21 6 2.3751 -7.1472 -0.1690 22 6 2.2422 -3.6639 0.0027 23 1 3.1548 -3.3475 0.5077 24 7 2.5655 -4.0144 -1.3867 25 1 -0.4850 0.8400 0.0004 26 1 0.9124 -2.2523 2.1556 27 1 -0.5588 -2.0274 1.1493 28 1 -0.0800 -5.1367 -1.3165 29 1 -0.3124 -6.9906 -2.9189 30 1 1.6921 -9.0641 -3.7376 31 1 2.9017 -9.0473 -0.9940 32 1 3.1289 -7.1883 0.6032 33 1 3.1764 -4.8166 -1.4245 34 1 1.7266 -4.1731 -1.9242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = -37.312271 kcal Electronic energy + Delta-G solvation = -17892.136183 eV Core-core repulsion = 15108.045777 eV Total energy + Delta-G solvation = -2784.090406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00435 -38.92072 -37.19017 -34.84025 -32.12886 -32.04629 -31.30299 -28.05194 -27.22957 -24.50782 -23.82041 -22.60383 -20.73455 -19.32447 -18.74555 -17.62688 -17.07088 -16.59809 -16.26973 -16.17413 -15.94599 -15.51143 -15.38930 -14.65001 -14.37971 -14.13506 -14.01426 -13.44879 -13.04288 -12.95350 -12.78330 -12.54949 -12.49221 -12.34181 -12.11284 -11.65046 -11.38277 -11.23286 -10.75120 -10.43130 -9.99342 -9.51119 -9.35893 -8.59957 -8.13411 -6.23591 0.09763 0.38375 1.14672 1.44078 1.45288 1.53084 1.58246 2.44257 2.67441 3.16787 3.29642 3.56524 3.82488 3.91903 3.99664 4.10090 4.19559 4.42625 4.48408 4.63626 4.71209 4.78020 4.84326 4.93120 5.07873 5.30129 5.41249 5.44681 5.60810 5.63165 5.82977 5.85839 6.23034 6.36818 6.70964 6.82408 6.88145 7.43622 8.93240 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.005344 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.568836 B = 5238.696444 C = 5494.092564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.061 3.939 10 H 0.012 0.988 11 C -0.019 4.019 12 S -0.358 6.358 13 C -0.020 4.020 14 H 0.107 0.893 15 C -0.086 4.086 16 C -0.092 4.092 17 C -0.150 4.150 18 C 0.106 3.894 19 O -0.508 6.508 20 C -0.142 4.142 21 C -0.092 4.092 22 C 0.110 3.890 23 H 0.076 0.924 24 N -0.827 5.827 25 H 0.262 0.738 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.411 0.589 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.342 0.658 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -14.644 -3.195 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.040 3.960 10 H 0.031 0.969 11 C -0.168 4.168 12 S -0.128 6.128 13 C -0.150 4.150 14 H 0.126 0.874 15 C -0.088 4.088 16 C -0.112 4.112 17 C -0.169 4.169 18 C 0.061 3.939 19 O -0.321 6.321 20 C -0.160 4.160 21 C -0.111 4.111 22 C -0.004 4.004 23 H 0.095 0.905 24 N -0.358 5.358 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.270 0.730 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.119 -14.632 -2.453 15.398 hybrid contribution 0.673 1.208 -0.319 1.420 sum 4.792 -13.424 -2.773 14.521 Atomic orbital electron populations 1.70014 1.07134 1.27508 1.51073 1.25697 0.95606 1.02341 0.94643 0.85639 0.78327 0.79075 0.78784 1.19980 1.21282 1.19497 1.21287 0.92917 0.90666 1.50424 0.92453 1.19341 0.91800 0.92803 0.92064 0.96942 1.24421 1.03345 0.87325 1.01679 1.87460 1.25354 1.12711 1.87256 1.23600 0.94272 0.97504 0.99660 0.87435 1.19451 0.97795 0.95120 0.96387 1.21013 0.97259 0.98627 0.94262 1.21524 1.01355 0.93100 1.00901 1.18548 0.95182 0.87305 0.92819 1.84762 1.70792 1.42422 1.34142 1.21568 0.98786 0.99670 0.95996 1.21099 0.98815 0.91819 0.99407 1.21945 0.98744 0.90597 0.89070 0.90543 1.58853 1.21585 1.44834 1.10538 0.92887 0.91767 0.89535 0.86767 0.84476 0.72969 0.82966 0.83564 0.84409 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.35 11.78 21.45 0.25 -51.09 16 2 C 0.02 0.88 5.31 84.65 0.45 1.33 16 3 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.51 -26.94 8.44 25.60 0.22 -26.73 16 8 H 0.06 2.99 7.54 -2.91 -0.02 2.97 16 9 C 0.06 2.87 2.09 -10.82 -0.02 2.85 16 10 H 0.01 0.67 7.76 -2.39 -0.02 0.65 16 11 C -0.02 -0.90 6.18 72.72 0.45 -0.45 16 12 S -0.36 -14.24 21.58 -56.49 -1.22 -15.46 16 13 C -0.02 -0.66 3.52 30.08 0.11 -0.55 16 14 H 0.11 3.23 7.97 -2.38 -0.02 3.21 16 15 C -0.09 -2.42 3.25 -19.85 -0.06 -2.49 16 16 C -0.09 -2.70 6.96 22.25 0.15 -2.55 16 17 C -0.15 -3.71 9.99 22.37 0.22 -3.49 16 18 C 0.11 2.31 6.71 22.51 0.15 2.46 16 19 O -0.51 -9.17 13.50 -92.39 -1.25 -10.42 16 20 C -0.14 -2.83 9.99 22.37 0.22 -2.60 16 21 C -0.09 -2.05 9.56 22.25 0.21 -1.84 16 22 C 0.11 4.19 3.19 45.12 0.14 4.34 16 23 H 0.08 3.03 7.62 -2.39 -0.02 3.01 16 24 N -0.83 -28.61 8.59 -167.82 -1.44 -30.05 16 25 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.06 3.02 8.10 -2.39 -0.02 3.00 16 27 H 0.09 4.51 7.08 -2.38 -0.02 4.49 16 28 H 0.11 3.91 7.32 -2.92 -0.02 3.88 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.41 3.28 9.06 -74.06 -0.67 2.61 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.15 2.64 8.00 -2.91 -0.02 2.61 16 33 H 0.34 9.88 7.77 -89.69 -0.70 9.18 16 34 H 0.34 11.82 6.23 -89.70 -0.56 11.26 16 Total: -1.00 -60.76 290.36 -0.17 -60.93 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.78 Total: 31.18 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 2.24 Total: -29.72 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.19 Total: -81.14 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.25 Total: -10.42 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -14.24 SS G_CDS: -1.22 Total: -15.46 kcal Total: -60.76 -0.17 -60.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.618 kcal (2) G-P(sol) polarization free energy of solvation -60.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds