Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99803 * 2 1 4 4 H 1.48494 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46742 * 300.00289 * 3 2 1 6 6 H 1.48496 * 109.46942 * 59.99777 * 3 2 1 7 7 C 1.37873 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99828 * 0.02562 * 7 2 1 10 10 H 1.09004 * 108.84994 * 336.48538 * 9 7 2 11 11 C 1.53712 * 108.88869 * 218.04738 * 9 7 2 12 12 S 1.83400 * 104.96788 * 236.37929 * 11 9 7 13 13 C 1.83991 * 95.84912 * 340.24989 * 12 11 9 14 14 H 1.08999 * 111.12769 * 277.43744 * 13 12 11 15 15 C 1.50703 * 111.12894 * 153.26151 * 13 12 11 16 16 C 1.38260 * 119.94631 * 308.20128 * 15 13 12 17 17 C 1.38140 * 120.05568 * 179.72498 * 16 15 13 18 18 C 1.38730 * 119.94762 * 0.54871 * 17 16 15 19 19 O 1.35900 * 120.06196 * 179.74940 * 18 17 16 20 20 C 1.38743 * 119.88357 * 359.72329 * 18 17 16 21 21 C 1.38137 * 119.94140 * 0.02562 * 20 18 17 22 22 C 1.52943 * 108.89193 * 95.06130 * 9 7 2 23 23 H 1.08993 * 109.60413 * 270.83074 * 22 9 7 24 24 N 1.46906 * 109.59481 * 31.14765 * 22 9 7 25 25 H 0.97002 * 120.00364 * 359.97438 * 1 2 3 26 26 H 1.08997 * 110.34091 * 355.25092 * 11 9 7 27 27 H 1.08994 * 110.34286 * 117.50610 * 11 9 7 28 28 H 1.07997 * 119.97127 * 359.97438 * 16 15 13 29 29 H 1.08001 * 120.02837 * 180.27135 * 17 16 15 30 30 H 0.96703 * 113.99593 * 269.97956 * 19 18 17 31 31 H 1.07997 * 120.02169 * 180.02562 * 20 18 17 32 32 H 1.08002 * 119.97099 * 179.97438 * 21 20 18 33 33 H 1.00900 * 110.99064 * 187.64903 * 24 22 9 34 34 H 1.00897 * 111.00563 * 311.60506 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.2557 -2.3311 0.4117 11 6 1.9939 -3.5025 0.8974 12 16 2.3302 -4.9454 -0.1836 13 6 1.0472 -4.5421 -1.4391 14 1 0.0645 -4.8923 -1.1232 15 6 1.4129 -5.1033 -2.7891 16 6 2.6584 -4.8433 -3.3302 17 6 2.9981 -5.3613 -4.5650 18 6 2.0842 -6.1334 -5.2673 19 8 2.4141 -6.6399 -6.4845 20 6 0.8330 -6.3881 -4.7247 21 6 0.5001 -5.8722 -3.4873 22 6 1.1147 -2.9921 -1.4408 23 1 0.2039 -2.5868 -1.8813 24 7 2.2780 -2.5539 -2.2236 25 1 -0.4851 0.8400 0.0004 26 1 2.9288 -3.0711 1.2552 27 1 1.3655 -3.7969 1.7378 28 1 3.3677 -4.2382 -2.7853 29 1 3.9727 -5.1616 -4.9853 30 1 2.1930 -6.0589 -7.2253 31 1 0.1200 -6.9893 -5.2693 32 1 -0.4739 -6.0698 -3.0646 33 1 2.1523 -2.7590 -3.2035 34 1 2.4613 -1.5721 -2.0803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259643453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = -13.020921 kcal Electronic energy + Delta-G solvation = -17909.272860 eV Core-core repulsion = 15126.235806 eV Total energy + Delta-G solvation = -2783.037054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63449 -37.42223 -35.92569 -32.70779 -30.93293 -30.72798 -29.78271 -26.73787 -25.20369 -22.94558 -22.50589 -21.06699 -18.89994 -18.23992 -16.59465 -16.37502 -15.83375 -15.22371 -15.08010 -14.68539 -14.29172 -13.88006 -13.47355 -13.03883 -12.91302 -12.79083 -12.15082 -11.98069 -11.75061 -11.37310 -11.10834 -10.97400 -10.78906 -10.65953 -10.39193 -10.23096 -9.99766 -9.23097 -8.86624 -8.69291 -8.66560 -8.17852 -7.56530 -6.81519 -6.24457 -4.26705 1.34978 1.62823 2.75675 3.15285 3.24422 3.27436 3.32316 3.93710 4.26516 4.35923 4.99376 5.10855 5.18229 5.19495 5.44541 5.57080 5.73088 5.89062 6.02495 6.10849 6.13172 6.21456 6.37897 6.45926 6.54021 6.64240 6.73335 6.99021 7.12572 7.21257 7.44672 7.69935 7.73394 8.01470 8.32840 8.53831 8.84786 9.36622 10.84173 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.005826 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.341647 B = 4805.271465 C = 5269.224312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.030 3.970 10 H 0.066 0.934 11 C -0.041 4.041 12 S -0.314 6.314 13 C 0.004 3.996 14 H 0.089 0.911 15 C -0.065 4.065 16 C -0.068 4.068 17 C -0.156 4.156 18 C 0.093 3.907 19 O -0.504 6.504 20 C -0.155 4.155 21 C -0.100 4.100 22 C 0.111 3.889 23 H 0.039 0.961 24 N -0.827 5.827 25 H 0.263 0.737 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.168 0.832 29 H 0.124 0.876 30 H 0.385 0.615 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.312 0.688 34 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -7.342 -8.153 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.009 3.991 10 H 0.084 0.916 11 C -0.189 4.189 12 S -0.085 6.085 13 C -0.125 4.125 14 H 0.108 0.892 15 C -0.067 4.067 16 C -0.087 4.087 17 C -0.174 4.174 18 C 0.048 3.952 19 O -0.314 6.314 20 C -0.174 4.174 21 C -0.120 4.120 22 C -0.003 4.003 23 H 0.056 0.944 24 N -0.363 5.363 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.185 0.815 29 H 0.142 0.858 30 H 0.240 0.760 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.096 -9.081 -7.197 11.776 hybrid contribution -1.420 2.830 -0.876 3.285 sum 0.676 -6.252 -8.074 10.233 Atomic orbital electron populations 1.69920 1.06067 1.26961 1.49909 1.25092 0.94901 0.99528 0.94681 0.86507 0.80367 0.83396 0.77671 1.19362 1.21081 1.20964 1.21055 0.93336 0.89112 1.50377 0.91504 1.19391 0.98259 0.93277 0.88128 0.91600 1.24257 1.03460 0.92977 0.98224 1.87196 1.52859 1.39332 1.29065 1.23129 0.97884 0.99373 0.92100 0.89234 1.19490 0.94656 0.97662 0.94867 1.21755 0.96978 0.96084 0.93915 1.21496 0.99914 0.99046 0.96981 1.18530 0.92904 0.96671 0.87080 1.84811 1.85077 1.47144 1.14319 1.21217 0.96118 1.02702 0.97332 1.20925 0.99364 0.97249 0.94430 1.22066 0.91983 0.87922 0.98282 0.94352 1.59252 1.40569 1.26657 1.09787 0.92720 0.89262 0.91794 0.81514 0.85784 0.76048 0.86041 0.86041 0.87529 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 12.75 55.43 0.71 -23.01 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.15 5.65 -34.44 -0.19 -12.35 16 8 H 0.07 1.66 7.72 -52.49 -0.41 1.26 16 9 C 0.03 0.67 2.68 -91.43 -0.24 0.43 16 10 H 0.07 1.67 7.22 -51.93 -0.37 1.30 16 11 C -0.04 -0.85 6.98 37.53 0.26 -0.59 16 12 S -0.31 -6.10 21.91 -107.50 -2.36 -8.46 16 13 C 0.00 0.07 3.49 -26.75 -0.09 -0.02 16 14 H 0.09 1.57 7.97 -51.93 -0.41 1.15 16 15 C -0.07 -1.07 4.80 -104.60 -0.50 -1.57 16 16 C -0.07 -1.09 6.76 -39.61 -0.27 -1.35 16 17 C -0.16 -2.22 9.99 -39.44 -0.39 -2.61 16 18 C 0.09 1.27 6.71 -39.21 -0.26 1.01 16 19 O -0.50 -6.01 13.50 -19.43 -0.26 -6.28 16 20 C -0.16 -2.09 9.99 -39.43 -0.39 -2.49 16 21 C -0.10 -1.45 9.68 -39.61 -0.38 -1.83 16 22 C 0.11 2.26 3.31 -66.60 -0.22 2.04 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 N -0.83 -15.67 6.62 -3.73 -0.02 -15.69 16 25 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.09 1.89 7.57 -51.93 -0.39 1.50 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.17 2.88 6.08 -52.49 -0.32 2.56 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.38 2.68 9.06 45.56 0.41 3.09 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.56 7.99 -52.49 -0.42 1.14 16 33 H 0.31 5.35 6.59 -39.29 -0.26 5.09 16 34 H 0.36 7.39 6.84 -39.29 -0.27 7.12 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -27.03 288.89 -8.66 -35.69 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -3.27 Total: 16.61 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.79 Total: -17.91 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.68 Total: -38.71 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.26 Total: -6.28 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -2.36 Total: -8.46 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.03 -8.66 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.669 kcal (2) G-P(sol) polarization free energy of solvation -27.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds