Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99803 * 2 1 4 4 H 1.48494 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46742 * 300.00289 * 3 2 1 6 6 H 1.48496 * 109.46942 * 59.99777 * 3 2 1 7 7 C 1.37873 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99828 * 0.02562 * 7 2 1 10 10 H 1.09004 * 108.84994 * 336.48538 * 9 7 2 11 11 C 1.53712 * 108.88869 * 218.04738 * 9 7 2 12 12 S 1.83400 * 104.96788 * 236.37929 * 11 9 7 13 13 C 1.83991 * 95.84912 * 340.24989 * 12 11 9 14 14 H 1.08999 * 111.12769 * 277.43744 * 13 12 11 15 15 C 1.50703 * 111.12894 * 153.26151 * 13 12 11 16 16 C 1.38260 * 119.94631 * 308.20128 * 15 13 12 17 17 C 1.38140 * 120.05568 * 179.72498 * 16 15 13 18 18 C 1.38730 * 119.94762 * 0.54871 * 17 16 15 19 19 O 1.35900 * 120.06196 * 179.74940 * 18 17 16 20 20 C 1.38743 * 119.88357 * 359.72329 * 18 17 16 21 21 C 1.38137 * 119.94140 * 0.02562 * 20 18 17 22 22 C 1.52943 * 108.89193 * 95.06130 * 9 7 2 23 23 H 1.08993 * 109.60413 * 270.83074 * 22 9 7 24 24 N 1.46906 * 109.59481 * 31.14765 * 22 9 7 25 25 H 0.97002 * 120.00364 * 359.97438 * 1 2 3 26 26 H 1.08997 * 110.34091 * 355.25092 * 11 9 7 27 27 H 1.08994 * 110.34286 * 117.50610 * 11 9 7 28 28 H 1.07997 * 119.97127 * 359.97438 * 16 15 13 29 29 H 1.08001 * 120.02837 * 180.27135 * 17 16 15 30 30 H 0.96703 * 113.99593 * 269.97956 * 19 18 17 31 31 H 1.07997 * 120.02169 * 180.02562 * 20 18 17 32 32 H 1.08002 * 119.97099 * 179.97438 * 21 20 18 33 33 H 1.00900 * 110.99064 * 187.64903 * 24 22 9 34 34 H 1.00897 * 111.00563 * 311.60506 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.2557 -2.3311 0.4117 11 6 1.9939 -3.5025 0.8974 12 16 2.3302 -4.9454 -0.1836 13 6 1.0472 -4.5421 -1.4391 14 1 0.0645 -4.8923 -1.1232 15 6 1.4129 -5.1033 -2.7891 16 6 2.6584 -4.8433 -3.3302 17 6 2.9981 -5.3613 -4.5650 18 6 2.0842 -6.1334 -5.2673 19 8 2.4141 -6.6399 -6.4845 20 6 0.8330 -6.3881 -4.7247 21 6 0.5001 -5.8722 -3.4873 22 6 1.1147 -2.9921 -1.4408 23 1 0.2039 -2.5868 -1.8813 24 7 2.2780 -2.5539 -2.2236 25 1 -0.4851 0.8400 0.0004 26 1 2.9288 -3.0711 1.2552 27 1 1.3655 -3.7969 1.7378 28 1 3.3677 -4.2382 -2.7853 29 1 3.9727 -5.1616 -4.9853 30 1 2.1930 -6.0589 -7.2253 31 1 0.1200 -6.9893 -5.2693 32 1 -0.4739 -6.0698 -3.0646 33 1 2.1523 -2.7590 -3.2035 34 1 2.4613 -1.5721 -2.0803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259643453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = -30.152501 kcal Electronic energy + Delta-G solvation = -17910.015742 eV Core-core repulsion = 15126.235806 eV Total energy + Delta-G solvation = -2783.779935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76583 -38.75830 -37.27284 -34.47131 -32.37029 -32.06476 -31.19071 -28.17648 -27.02797 -24.48041 -23.63300 -22.37995 -20.56132 -19.24911 -18.47515 -17.84927 -17.10678 -16.53521 -16.45853 -16.25928 -15.68998 -15.33195 -14.88746 -14.61461 -14.27154 -14.16837 -13.64796 -13.26314 -13.16746 -12.89668 -12.78165 -12.63496 -12.36842 -12.24448 -11.95142 -11.75083 -11.29208 -11.07960 -10.66954 -10.49466 -9.80745 -9.42196 -9.10175 -8.38337 -8.18149 -6.24698 0.18772 0.51346 1.27484 1.39820 1.45885 1.55815 1.63635 2.41438 2.81302 3.14052 3.37762 3.76163 3.87434 3.99039 4.16895 4.22393 4.40371 4.46520 4.54490 4.60062 4.77780 4.82807 4.94805 4.99946 5.26230 5.40247 5.48262 5.54722 5.58011 5.73269 5.82127 6.00838 6.19455 6.63555 6.84439 6.92056 6.99691 7.41200 8.90599 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.005826 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.341647 B = 4805.271465 C = 5269.224312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.496 4.496 8 H 0.061 0.939 9 C 0.028 3.972 10 H 0.032 0.968 11 C -0.041 4.041 12 S -0.309 6.309 13 C 0.015 3.985 14 H 0.095 0.905 15 C -0.087 4.087 16 C -0.076 4.076 17 C -0.159 4.159 18 C 0.102 3.898 19 O -0.509 6.509 20 C -0.154 4.154 21 C -0.100 4.100 22 C 0.119 3.881 23 H 0.015 0.985 24 N -0.817 5.817 25 H 0.262 0.738 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.409 0.591 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.325 0.675 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -8.359 -9.809 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.008 3.992 10 H 0.051 0.949 11 C -0.189 4.189 12 S -0.079 6.079 13 C -0.114 4.114 14 H 0.113 0.887 15 C -0.089 4.089 16 C -0.095 4.095 17 C -0.178 4.178 18 C 0.057 3.943 19 O -0.322 6.322 20 C -0.173 4.173 21 C -0.119 4.119 22 C 0.005 3.995 23 H 0.033 0.967 24 N -0.353 5.353 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.268 0.732 31 H 0.164 0.836 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.653 -10.108 -8.879 13.713 hybrid contribution -1.580 3.039 -0.474 3.458 sum 1.073 -7.069 -9.353 11.772 Atomic orbital electron populations 1.70036 1.07375 1.27429 1.51587 1.25709 0.95433 1.02319 0.94718 0.85569 0.79380 0.79863 0.77238 1.18794 1.20936 1.21396 1.21181 0.93028 0.89968 1.49362 0.92046 1.19337 0.96434 0.93644 0.89822 0.94944 1.24070 1.02967 0.93443 0.98445 1.87138 1.53555 1.38083 1.29144 1.23072 0.97727 0.97474 0.93121 0.88691 1.19395 0.95677 0.99540 0.94259 1.21583 0.96580 0.96662 0.94670 1.21625 1.00828 0.98990 0.96359 1.18602 0.92614 0.95386 0.87687 1.84751 1.85114 1.47903 1.14429 1.21474 0.96561 1.02361 0.96864 1.21110 0.99613 0.96503 0.94711 1.21813 0.91383 0.89699 0.96622 0.96677 1.59227 1.39706 1.25667 1.10680 0.92921 0.89956 0.91067 0.83133 0.84337 0.73216 0.83634 0.84540 0.86085 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 12.75 21.45 0.27 -50.12 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.95 40.86 29.54 68.60 2.03 42.88 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.50 -24.51 5.65 25.60 0.14 -24.37 16 8 H 0.06 3.07 7.72 -2.91 -0.02 3.05 16 9 C 0.03 1.29 2.68 -11.32 -0.03 1.26 16 10 H 0.03 1.71 7.22 -2.38 -0.02 1.69 16 11 C -0.04 -1.71 6.98 72.22 0.50 -1.21 16 12 S -0.31 -11.84 21.91 -56.49 -1.24 -13.08 16 13 C 0.01 0.53 3.49 30.58 0.11 0.64 16 14 H 0.09 3.27 7.97 -2.39 -0.02 3.25 16 15 C -0.09 -2.73 4.80 -19.85 -0.10 -2.83 16 16 C -0.08 -2.30 6.76 22.25 0.15 -2.15 16 17 C -0.16 -4.17 9.99 22.36 0.22 -3.94 16 18 C 0.10 2.47 6.71 22.51 0.15 2.62 16 19 O -0.51 -10.23 13.50 -92.43 -1.25 -11.48 16 20 C -0.15 -3.65 9.99 22.37 0.22 -3.43 16 21 C -0.10 -2.66 9.68 22.25 0.22 -2.45 16 22 C 0.12 4.89 3.31 45.63 0.15 5.04 16 23 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 24 N -0.82 -31.01 6.62 -165.70 -1.10 -32.11 16 25 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.08 3.52 7.57 -2.39 -0.02 3.50 16 27 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.15 5.09 6.08 -2.91 -0.02 5.07 16 29 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.41 4.08 9.06 -74.06 -0.67 3.41 16 31 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.14 3.17 7.99 -2.91 -0.02 3.14 16 33 H 0.33 11.00 6.59 -89.69 -0.59 10.41 16 34 H 0.35 14.46 6.84 -89.70 -0.61 13.85 16 Total: -1.00 -57.29 288.89 0.19 -57.10 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.73 Total: 36.26 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 2.21 Total: -29.46 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -0.82 Total: -82.23 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.25 Total: -11.48 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: -11.84 SS G_CDS: -1.24 Total: -13.08 kcal Total: -57.29 0.19 -57.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259643453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.945 kcal (2) G-P(sol) polarization free energy of solvation -57.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds