Wall clock time and date at job start Mon Mar 30 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46484 * 126.49696 * 2 1 4 4 C 1.39671 * 134.01592 * 359.97438 * 3 2 1 5 5 C 1.36616 * 119.78262 * 180.28112 * 4 3 2 6 6 C 1.38827 * 120.53805 * 359.44232 * 5 4 3 7 7 C 1.37854 * 120.65192 * 0.55879 * 6 5 4 8 8 Cl 1.73602 * 120.12025 * 179.70344 * 7 6 5 9 9 C 1.39225 * 119.75490 * 359.72918 * 7 6 5 10 10 N 1.37726 * 133.50783 * 179.97438 * 9 7 6 11 11 H 0.97000 * 125.07063 * 359.97438 * 10 9 7 12 12 C 1.34245 * 126.49937 * 179.97438 * 2 1 3 13 13 C 1.50694 * 125.03665 * 359.97438 * 12 2 1 14 14 H 1.09003 * 109.47178 * 35.00470 * 13 12 2 15 15 O 1.42900 * 109.46971 * 155.00144 * 13 12 2 16 16 C 1.50699 * 109.47276 * 275.00166 * 13 12 2 17 17 H 1.07997 * 120.00065 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00130 * 179.97438 * 16 13 12 19 19 N 1.31521 * 119.99769 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00040 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47022 * 60.00250 * 20 18 16 22 22 H 1.48501 * 109.47192 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47055 * 300.00080 * 20 18 16 24 24 H 1.09001 * 109.47490 * 90.02610 * 1 2 3 25 25 H 1.09002 * 109.46777 * 210.02694 * 1 2 3 26 26 H 1.09002 * 109.46924 * 330.02128 * 1 2 3 27 27 H 1.08002 * 120.10488 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.72709 * 179.72680 * 5 4 3 29 29 H 1.08001 * 119.67234 * 180.28987 * 6 5 4 30 30 H 0.96701 * 114.00006 * 60.00459 * 15 13 12 31 31 H 0.97001 * 119.99405 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1481 2.5552 -0.0004 5 6 3.2057 3.4199 -0.0061 6 6 4.5087 2.9408 0.0002 7 6 4.7590 1.5851 0.0007 8 17 6.3938 1.0011 0.0009 9 6 3.6959 0.6862 0.0006 10 7 3.6168 -0.6888 0.0005 11 1 4.3774 -1.2908 0.0003 12 6 2.3055 -1.0791 0.0005 13 6 1.8283 -2.5085 0.0017 14 1 0.9145 -2.5870 -0.5875 15 8 2.8354 -3.3474 -0.5674 16 6 1.5522 -2.9448 1.4175 17 1 1.7065 -2.2558 2.2346 18 6 1.1016 -4.2233 1.6695 19 7 0.9133 -5.0622 0.6742 20 14 0.7601 -4.7643 3.4245 21 1 -0.2859 -3.8921 4.0166 22 1 0.2896 -6.1728 3.4257 23 1 2.0054 -4.6582 4.2264 24 1 -0.3634 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8902 0.5135 27 1 1.1372 2.9355 -0.0013 28 1 3.0266 4.4849 -0.0109 29 1 5.3343 3.6370 0.0003 30 1 3.6780 -3.3276 -0.0933 31 1 0.5966 -5.9618 0.8516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259657346.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:35 Heat of formation + Delta-G solvation = -33.446149 kcal Electronic energy + Delta-G solvation = -17478.938926 eV Core-core repulsion = 14557.139367 eV Total energy + Delta-G solvation = -2921.799559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.31181 -38.67004 -37.47697 -36.84179 -34.43705 -33.84373 -31.06929 -30.59649 -28.88635 -27.22940 -25.14650 -23.20728 -22.16770 -20.18132 -19.28137 -18.78178 -17.50351 -16.83969 -16.72613 -15.79473 -15.77346 -15.46650 -15.11615 -14.82511 -14.38398 -13.94119 -13.49880 -13.39614 -13.25592 -13.10844 -12.91771 -12.83567 -12.59643 -12.23134 -12.13177 -12.10142 -11.86006 -11.37009 -10.81238 -10.55483 -10.22191 -9.10936 -8.47649 -8.15996 -6.47110 0.05509 0.64143 1.15131 1.39714 1.40577 1.49008 1.74214 2.15366 2.37979 2.86778 3.05253 3.75199 3.96911 4.03644 4.15453 4.27870 4.43837 4.54953 4.64798 4.88239 4.92500 4.99312 5.16959 5.22970 5.26699 5.43171 5.58631 5.63790 5.81671 5.89870 6.01002 6.19625 6.56307 6.62351 7.16824 7.35490 8.82948 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.006016 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.689590 B = 4653.218456 C = 5182.022110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.200 4.200 3 C -0.109 4.109 4 C -0.071 4.071 5 C -0.134 4.134 6 C -0.092 4.092 7 C -0.060 4.060 8 Cl -0.080 7.080 9 C 0.079 3.921 10 N -0.580 5.580 11 H 0.416 0.584 12 C 0.079 3.921 13 C 0.289 3.711 14 H 0.056 0.944 15 O -0.573 6.573 16 C -0.572 4.572 17 H 0.053 0.947 18 C 0.035 3.965 19 N -0.892 5.892 20 Si 0.959 3.041 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.272 1.272 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.147 0.853 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.355 0.645 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 15.441 -0.463 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.206 4.206 3 C -0.115 4.115 4 C -0.090 4.090 5 C -0.154 4.154 6 C -0.111 4.111 7 C -0.089 4.089 8 Cl -0.051 7.051 9 C -0.030 4.030 10 N -0.183 5.183 11 H 0.253 0.747 12 C -0.030 4.030 13 C 0.231 3.769 14 H 0.073 0.927 15 O -0.377 6.377 16 C -0.610 4.610 17 H 0.071 0.929 18 C -0.168 4.168 19 N -0.529 5.529 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.164 0.836 28 H 0.185 0.815 29 H 0.177 0.823 30 H 0.200 0.800 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.686 14.954 -0.964 15.701 hybrid contribution 0.817 -1.158 1.159 1.831 sum 5.504 13.796 0.195 14.854 Atomic orbital electron populations 1.20040 0.88537 1.02339 1.01607 1.20257 0.96272 0.89826 1.14227 1.19365 0.90768 0.94459 1.06885 1.20675 1.01132 0.89609 0.97547 1.20925 0.90454 1.01226 1.02759 1.21089 0.99186 0.91325 0.99541 1.20073 0.82681 0.93304 1.12887 1.98335 1.20135 1.89291 1.97344 1.18195 0.95085 0.83587 1.06130 1.41562 1.07299 1.04793 1.64599 0.74672 1.21661 0.82956 0.98222 1.00162 1.18026 0.87056 0.78276 0.93555 0.92671 1.86598 1.24339 1.70007 1.56730 1.21618 1.48344 0.98414 0.92620 0.92896 1.25797 0.93555 0.96458 1.01036 1.70168 1.43421 1.06362 1.32912 0.85620 0.78865 0.77388 0.79798 1.19232 1.20575 1.19729 0.91711 0.92961 0.90303 0.83558 0.81527 0.82305 0.80022 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.02 71.24 0.71 -1.64 16 2 C -0.20 -7.89 6.31 -18.63 -0.12 -8.01 16 3 C -0.11 -3.80 6.35 -20.20 -0.13 -3.93 16 4 C -0.07 -1.86 10.05 22.24 0.22 -1.64 16 5 C -0.13 -2.82 9.97 22.03 0.22 -2.60 16 6 C -0.09 -2.11 9.80 22.32 0.22 -1.89 16 7 C -0.06 -1.76 6.34 22.42 0.14 -1.61 16 8 Cl -0.08 -2.12 28.97 -2.72 -0.08 -2.20 16 9 C 0.08 2.76 7.07 39.04 0.28 3.04 16 10 N -0.58 -22.16 5.92 -175.86 -1.04 -23.21 16 11 H 0.42 14.62 8.11 -92.71 -0.75 13.87 16 12 C 0.08 3.43 6.00 40.87 0.25 3.67 16 13 C 0.29 14.54 2.77 29.10 0.08 14.62 16 14 H 0.06 3.06 7.92 -2.39 -0.02 3.05 16 15 O -0.57 -28.93 12.62 -148.98 -1.88 -30.81 16 16 C -0.57 -30.57 8.75 25.60 0.22 -30.35 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.04 1.90 5.40 84.65 0.46 2.36 16 19 N -0.89 -51.13 12.84 21.45 0.28 -50.85 16 20 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 25 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.35 15.62 8.18 -74.06 -0.61 15.01 16 31 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -63.13 288.56 1.68 -61.45 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.18 Total: 29.23 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 2.55 Total: -27.98 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -0.77 Total: -74.06 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.88 Total: -30.81 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Total: -63.13 1.68 -61.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657346.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.006 kcal (2) G-P(sol) polarization free energy of solvation -63.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds