Wall clock time and date at job start Mon Mar 30 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.46483 * 126.50097 * 2 1 4 4 C 1.39672 * 134.02261 * 359.97438 * 3 2 1 5 5 C 1.36610 * 119.78709 * 180.08709 * 4 3 2 6 6 C 1.38827 * 120.54149 * 359.89388 * 5 4 3 7 7 C 1.37850 * 120.64956 * 0.07860 * 6 5 4 8 8 Cl 1.73601 * 120.12276 * 179.97438 * 7 6 5 9 9 C 1.39223 * 119.75833 * 359.97438 * 7 6 5 10 10 N 1.37730 * 133.50771 * 180.30062 * 9 7 6 11 11 H 0.97001 * 125.06924 * 359.97438 * 10 9 7 12 12 C 1.34241 * 126.49765 * 179.97438 * 2 1 3 13 13 C 1.50698 * 125.03740 * 0.02562 * 12 2 1 14 14 H 1.09001 * 109.47122 * 324.99639 * 13 12 2 15 15 O 1.42905 * 109.47321 * 204.99539 * 13 12 2 16 16 C 1.50697 * 109.47576 * 84.99294 * 13 12 2 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 13 12 19 19 N 1.31510 * 119.99600 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 120.00227 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.46909 * 90.00072 * 20 18 16 22 22 H 1.48503 * 109.46868 * 209.99959 * 20 18 16 23 23 H 1.48495 * 109.46964 * 330.00013 * 20 18 16 24 24 H 1.09004 * 109.47272 * 270.00682 * 1 2 3 25 25 H 1.09002 * 109.46933 * 30.00224 * 1 2 3 26 26 H 1.09001 * 109.47808 * 150.00258 * 1 2 3 27 27 H 1.08002 * 120.10305 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.72841 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.67909 * 180.02562 * 6 5 4 30 30 H 0.96696 * 114.00036 * 299.99741 * 15 13 12 31 31 H 0.97006 * 120.00212 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3782 1.1775 0.0000 4 6 2.1483 2.5552 -0.0004 5 6 3.2060 3.4197 -0.0021 6 6 4.5089 2.9405 -0.0011 7 6 4.7590 1.5849 -0.0001 8 17 6.3938 1.0006 0.0004 9 6 3.6959 0.6860 0.0005 10 7 3.6167 -0.6890 0.0068 11 1 4.3773 -1.2910 0.0119 12 6 2.3054 -1.0791 0.0005 13 6 1.8281 -2.5085 0.0006 14 1 0.9143 -2.5865 0.5898 15 8 2.8352 -3.3471 0.5704 16 6 1.5518 -2.9461 -1.4148 17 1 1.7068 -2.2580 -2.2327 18 6 1.1012 -4.2248 -1.6656 19 7 0.9120 -5.0624 -0.6696 20 14 0.7595 -4.7673 -3.4202 21 1 1.9918 -5.3536 -4.0059 22 1 -0.3220 -5.7850 -3.4218 23 1 0.3371 -3.5948 -4.2275 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3635 -0.8900 -0.5138 27 1 1.1375 2.9356 -0.0005 28 1 3.0271 4.4849 -0.0029 29 1 5.3347 3.6365 -0.0020 30 1 3.6777 -3.3277 0.0962 31 1 0.5946 -5.9620 -0.8460 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259657348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:37 Heat of formation + Delta-G solvation = -15.477828 kcal Electronic energy + Delta-G solvation = -17478.120850 eV Core-core repulsion = 14557.100455 eV Total energy + Delta-G solvation = -2921.020395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.97079 -37.32441 -36.22166 -35.23814 -32.65100 -32.23293 -29.73092 -29.28918 -27.21307 -25.71769 -23.45390 -21.96601 -20.77153 -18.75848 -17.59952 -17.12849 -16.17208 -15.45216 -14.75348 -14.46203 -14.37850 -14.12949 -13.74569 -13.07005 -12.79140 -12.61678 -12.05804 -11.97380 -11.88002 -11.56871 -11.23128 -11.20158 -11.01812 -10.99634 -10.92974 -10.63212 -10.30250 -9.51418 -9.03200 -8.80425 -8.60638 -7.80281 -7.07219 -6.17900 -4.39170 1.25992 1.81464 2.29386 3.17487 3.20476 3.27673 3.33138 3.52029 4.05371 4.28128 4.99947 5.06339 5.10871 5.35238 5.45367 5.55365 5.86366 5.98653 6.03407 6.07044 6.21841 6.32659 6.37717 6.55832 6.64225 6.84679 6.95329 7.08744 7.39215 7.63079 7.69881 7.85064 7.99464 8.62307 9.02614 9.36671 10.84471 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.006015 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.742229 B = 4653.665059 C = 5182.251276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.196 4.196 3 C -0.082 4.082 4 C -0.070 4.070 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.041 4.041 8 Cl -0.088 7.088 9 C 0.095 3.905 10 N -0.578 5.578 11 H 0.414 0.586 12 C 0.114 3.886 13 C 0.280 3.720 14 H 0.087 0.913 15 O -0.559 6.559 16 C -0.567 4.567 17 H 0.061 0.939 18 C 0.082 3.918 19 N -0.856 5.856 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.271 1.271 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.343 0.657 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 12.619 1.197 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.202 4.202 3 C -0.088 4.088 4 C -0.089 4.089 5 C -0.166 4.166 6 C -0.126 4.126 7 C -0.071 4.071 8 Cl -0.059 7.059 9 C -0.015 4.015 10 N -0.180 5.180 11 H 0.251 0.749 12 C 0.005 3.995 13 C 0.222 3.778 14 H 0.105 0.895 15 O -0.361 6.361 16 C -0.605 4.605 17 H 0.079 0.921 18 C -0.125 4.125 19 N -0.491 5.491 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.196 1.196 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.187 0.813 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.166 12.123 1.704 12.932 hybrid contribution 0.906 -0.480 -1.431 1.760 sum 5.072 11.643 0.273 12.703 Atomic orbital electron populations 1.20027 0.89511 1.02362 1.00883 1.19865 0.95321 0.89184 1.15799 1.19151 0.91240 0.93386 1.05009 1.20299 0.99083 0.90958 0.98511 1.20421 0.91498 0.99366 1.05335 1.20566 0.97644 0.91901 1.02461 1.19833 0.82616 0.92704 1.11906 1.98335 1.21069 1.89155 1.97333 1.17843 0.93977 0.84026 1.05616 1.41692 1.08138 1.04063 1.64119 0.74870 1.22229 0.81416 0.99561 0.96316 1.18475 0.87898 0.76196 0.95199 0.89527 1.86677 1.23643 1.69466 1.56269 1.21445 1.48766 0.98454 0.91810 0.92067 1.25030 0.93782 0.96395 0.97315 1.70058 1.42180 1.06036 1.30805 0.86556 0.78184 0.78628 0.84431 1.20456 1.20884 1.19579 0.92829 0.92896 0.90481 0.85938 0.85755 0.85418 0.81299 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.02 36.00 0.36 -0.86 16 2 C -0.20 -3.85 6.31 -102.72 -0.65 -4.49 16 3 C -0.08 -1.48 6.35 -105.14 -0.67 -2.15 16 4 C -0.07 -1.03 10.05 -39.63 -0.40 -1.43 16 5 C -0.15 -1.89 9.97 -39.95 -0.40 -2.29 16 6 C -0.11 -1.43 9.80 -39.51 -0.39 -1.82 16 7 C -0.04 -0.65 6.33 -39.36 -0.25 -0.90 16 8 Cl -0.09 -1.23 28.97 -51.86 -1.50 -2.74 16 9 C 0.09 1.70 7.07 -83.95 -0.59 1.10 16 10 N -0.58 -10.81 5.92 -6.93 -0.04 -10.86 16 11 H 0.41 7.02 8.11 -40.82 -0.33 6.69 16 12 C 0.11 2.39 6.00 -81.78 -0.49 1.90 16 13 C 0.28 6.72 2.77 -29.04 -0.08 6.64 16 14 H 0.09 2.24 7.92 -51.93 -0.41 1.83 16 15 O -0.56 -13.47 12.62 -35.23 -0.44 -13.91 16 16 C -0.57 -14.65 8.75 -34.44 -0.30 -14.95 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 19 N -0.86 -23.81 12.84 55.43 0.71 -23.10 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.34 7.20 8.18 45.56 0.37 7.58 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -28.75 288.55 -8.33 -37.08 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -2.43 Total: 11.03 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -3.95 Total: -17.18 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.67 Total: -33.96 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.44 Total: -13.91 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.75 -8.33 -37.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.599 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds