Wall clock time and date at job start Mon Mar 30 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00037 * 2 1 4 4 H 1.48493 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47326 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.47215 * 59.99999 * 3 2 1 7 7 C 1.37877 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46910 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47551 * 305.00143 * 10 9 7 12 12 N 1.46902 * 109.47444 * 65.00400 * 10 9 7 13 13 C 1.50705 * 109.47122 * 184.99851 * 10 9 7 14 14 C 1.33983 * 126.90741 * 265.00452 * 13 10 9 15 15 O 1.34465 * 110.15383 * 179.97438 * 14 13 10 16 16 C 1.34809 * 110.88831 * 0.02562 * 15 14 13 17 17 C 1.38936 * 133.48213 * 179.97438 * 16 15 14 18 18 C 1.37962 * 119.80700 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 119.66899 * 179.97438 * 18 17 16 20 20 C 1.38849 * 120.65671 * 359.97438 * 18 17 16 21 21 C 1.36721 * 120.40171 * 0.28016 * 20 18 17 22 22 C 1.39407 * 119.73596 * 359.45337 * 21 20 18 23 23 H 0.97000 * 120.00359 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46980 * 60.00437 * 9 7 2 25 25 H 1.08999 * 109.47218 * 300.00293 * 9 7 2 26 26 H 1.00902 * 110.99542 * 296.04458 * 12 10 9 27 27 H 1.00903 * 111.00140 * 59.99580 * 12 10 9 28 28 H 1.07993 * 124.92659 * 359.97438 * 14 13 10 29 29 H 1.07998 * 120.09341 * 0.04618 * 17 16 15 30 30 H 1.08002 * 119.79371 * 179.97438 * 20 18 17 31 31 H 1.08008 * 120.13038 * 179.69541 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 2.9294 -3.5552 -0.8423 12 7 3.0083 -3.6540 1.2547 13 6 1.4958 -4.9637 -0.1243 14 6 1.1058 -5.7658 0.8755 15 8 0.4614 -6.8388 0.3841 16 6 0.4006 -6.7884 -0.9617 17 6 -0.1418 -7.6283 -1.9264 18 6 -0.0402 -7.2950 -3.2613 19 17 -0.7187 -8.3475 -4.4637 20 6 0.5993 -6.1264 -3.6526 21 6 1.1439 -5.2896 -2.7185 22 6 1.0459 -5.6073 -1.3646 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 3.5700 -2.8192 1.3310 27 1 2.3960 -3.7518 2.0508 28 1 1.2831 -5.5778 1.9240 29 1 -0.6418 -8.5392 -1.6320 30 1 0.6712 -5.8793 -4.7015 31 1 1.6447 -4.3841 -3.0281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:03 Heat of formation + Delta-G solvation = 8.321335 kcal Electronic energy + Delta-G solvation = -17080.965099 eV Core-core repulsion = 14160.976713 eV Total energy + Delta-G solvation = -2919.988385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.24807 -38.07027 -36.34682 -36.04903 -32.75589 -31.58955 -30.38654 -28.74241 -28.09088 -24.69001 -23.31855 -22.16991 -21.62857 -19.27426 -17.41097 -16.98200 -16.36513 -16.00513 -15.86422 -14.73733 -14.64934 -14.15479 -13.96270 -13.51682 -13.16898 -13.10439 -12.66610 -12.23793 -11.86045 -11.65015 -11.34608 -11.29398 -11.05649 -10.85002 -10.70582 -10.45267 -10.11659 -9.53341 -9.23006 -8.57099 -8.50600 -8.07201 -7.68659 -6.13934 -4.19243 0.91085 1.36283 1.92694 2.63940 3.11702 3.22089 3.30762 3.33492 3.70987 4.33779 4.65703 4.73247 5.00044 5.09388 5.21146 5.36595 5.39215 5.63258 5.78456 5.86514 6.07597 6.22407 6.37646 6.43052 6.56763 6.59598 6.79237 7.30082 7.39933 7.50193 7.78918 7.93548 8.10304 8.23759 8.87807 9.46643 10.96642 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.004662 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.954509 B = 6005.175732 C = 6676.529137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.001 3.999 10 C 0.156 3.844 11 H 0.079 0.921 12 N -0.841 5.841 13 C -0.136 4.136 14 C -0.001 4.001 15 O -0.195 6.195 16 C 0.059 3.941 17 C -0.103 4.103 18 C -0.015 4.015 19 Cl -0.068 7.068 20 C -0.133 4.133 21 C -0.047 4.047 22 C -0.112 4.112 23 H 0.261 0.739 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.351 0.649 27 H 0.327 0.673 28 H 0.207 0.793 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -13.573 -3.808 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.037 4.037 10 C 0.044 3.956 11 H 0.097 0.903 12 N -0.369 5.369 13 C -0.138 4.138 14 C -0.065 4.065 15 O -0.096 6.096 16 C 0.011 3.989 17 C -0.122 4.122 18 C -0.041 4.041 19 Cl -0.039 7.039 20 C -0.152 4.152 21 C -0.065 4.065 22 C -0.113 4.113 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.165 0.835 27 H 0.138 0.862 28 H 0.224 0.776 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.712 -14.418 -4.052 14.993 hybrid contribution -0.296 1.947 0.114 1.973 sum 0.416 -12.471 -3.938 13.084 Atomic orbital electron populations 1.69979 1.06137 1.26740 1.49941 1.25015 0.94807 0.99350 0.94956 0.86531 0.80113 0.83665 0.77675 1.19609 1.20949 1.20999 1.21175 0.92925 0.90729 1.51764 0.92389 1.19785 0.94399 0.91541 0.97983 1.19940 0.94058 0.88671 0.92904 0.90289 1.59204 1.27827 1.46260 1.03650 1.21426 1.03288 0.98948 0.90119 1.23621 0.97587 0.85752 0.99500 1.83981 1.64759 1.42453 1.18427 1.19245 1.00850 0.96389 0.82414 1.19474 1.03732 1.00431 0.88595 1.20326 1.01343 0.93700 0.88777 1.98357 1.83970 1.65889 1.55726 1.20586 1.00483 0.93555 1.00592 1.20340 0.97016 0.98967 0.90159 1.19939 1.01575 0.95312 0.94514 0.92883 0.96101 0.96495 0.83517 0.86181 0.77635 0.84407 0.84517 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.53 -13.78 8.55 -34.44 -0.29 -14.07 16 8 H 0.06 1.46 7.14 -52.49 -0.37 1.08 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.16 3.04 3.28 -68.86 -0.23 2.82 16 11 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 12 N -0.84 -14.57 8.96 -5.65 -0.05 -14.62 16 13 C -0.14 -2.45 5.47 -102.66 -0.56 -3.02 16 14 C 0.00 -0.01 11.27 29.24 0.33 0.32 16 15 O -0.19 -3.16 10.58 3.87 0.04 -3.12 16 16 C 0.06 0.96 7.42 -38.48 -0.29 0.68 16 17 C -0.10 -1.43 9.84 -39.42 -0.39 -1.82 16 18 C -0.01 -0.20 6.31 -39.46 -0.25 -0.44 16 19 Cl -0.07 -0.78 28.93 -51.86 -1.50 -2.28 16 20 C -0.13 -1.79 9.75 -39.90 -0.39 -2.18 16 21 C -0.05 -0.72 10.05 -39.69 -0.40 -1.12 16 22 C -0.11 -1.94 6.38 -105.15 -0.67 -2.61 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.35 6.24 7.90 -39.29 -0.31 5.93 16 27 H 0.33 5.25 8.00 -39.29 -0.31 4.93 16 28 H 0.21 2.65 7.34 -52.49 -0.39 2.26 16 29 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 LS Contribution 288.30 15.07 4.34 4.34 Total: -1.00 -28.97 288.30 -7.87 -36.83 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.06 Total: 8.19 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.36 Total: -19.98 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.69 Total: -39.66 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.97 -7.87 -36.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.156 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds