Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00037 * 2 1 4 4 H 1.48493 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47326 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.47215 * 59.99999 * 3 2 1 7 7 C 1.37877 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46910 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47551 * 305.00143 * 10 9 7 12 12 N 1.46902 * 109.47444 * 65.00400 * 10 9 7 13 13 C 1.50705 * 109.47122 * 184.99851 * 10 9 7 14 14 C 1.33983 * 126.90741 * 265.00452 * 13 10 9 15 15 O 1.34465 * 110.15383 * 179.97438 * 14 13 10 16 16 C 1.34809 * 110.88831 * 0.02562 * 15 14 13 17 17 C 1.38936 * 133.48213 * 179.97438 * 16 15 14 18 18 C 1.37962 * 119.80700 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 119.66899 * 179.97438 * 18 17 16 20 20 C 1.38849 * 120.65671 * 359.97438 * 18 17 16 21 21 C 1.36721 * 120.40171 * 0.28016 * 20 18 17 22 22 C 1.39407 * 119.73596 * 359.45337 * 21 20 18 23 23 H 0.97000 * 120.00359 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46980 * 60.00437 * 9 7 2 25 25 H 1.08999 * 109.47218 * 300.00293 * 9 7 2 26 26 H 1.00902 * 110.99542 * 296.04458 * 12 10 9 27 27 H 1.00903 * 111.00140 * 59.99580 * 12 10 9 28 28 H 1.07993 * 124.92659 * 359.97438 * 14 13 10 29 29 H 1.07998 * 120.09341 * 0.04618 * 17 16 15 30 30 H 1.08002 * 119.79371 * 179.97438 * 20 18 17 31 31 H 1.08008 * 120.13038 * 179.69541 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 2.9294 -3.5552 -0.8423 12 7 3.0083 -3.6540 1.2547 13 6 1.4958 -4.9637 -0.1243 14 6 1.1058 -5.7658 0.8755 15 8 0.4614 -6.8388 0.3841 16 6 0.4006 -6.7884 -0.9617 17 6 -0.1418 -7.6283 -1.9264 18 6 -0.0402 -7.2950 -3.2613 19 17 -0.7187 -8.3475 -4.4637 20 6 0.5993 -6.1264 -3.6526 21 6 1.1439 -5.2896 -2.7185 22 6 1.0459 -5.6073 -1.3646 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 3.5700 -2.8192 1.3310 27 1 2.3960 -3.7518 2.0508 28 1 1.2831 -5.5778 1.9240 29 1 -0.6418 -8.5392 -1.6320 30 1 0.6712 -5.8793 -4.7015 31 1 1.6447 -4.3841 -3.0281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = -9.083955 kcal Electronic energy + Delta-G solvation = -17081.719849 eV Core-core repulsion = 14160.976713 eV Total energy + Delta-G solvation = -2920.743135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.48464 -39.18542 -37.72823 -37.29583 -34.69468 -32.92308 -31.55800 -30.10789 -29.80844 -26.47097 -24.51683 -23.34869 -23.33398 -20.65305 -18.92222 -18.32161 -17.97848 -17.15258 -17.13062 -16.57440 -16.19368 -15.34289 -15.25018 -14.87894 -14.52359 -14.30664 -14.21562 -14.07881 -13.43786 -13.09452 -12.84878 -12.58498 -12.39536 -12.35296 -12.18233 -11.99096 -11.88199 -11.22813 -10.81519 -10.61253 -9.73409 -9.49467 -9.04054 -8.22209 -6.34516 -0.24903 0.19866 0.87090 1.34498 1.39451 1.41797 1.53369 1.92914 2.38897 2.52696 3.11543 3.47506 3.49446 3.85398 3.92744 4.07278 4.23902 4.39760 4.41642 4.57215 4.82774 4.87680 4.98701 5.09626 5.26143 5.31504 5.39174 5.45344 5.59642 5.74849 6.05394 6.14332 6.37430 6.70488 6.82512 7.36108 8.89096 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.004662 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.954509 B = 6005.175732 C = 6676.529137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.013 3.987 10 C 0.175 3.825 11 H 0.069 0.931 12 N -0.827 5.827 13 C -0.173 4.173 14 C 0.016 3.984 15 O -0.195 6.195 16 C 0.042 3.958 17 C -0.099 4.099 18 C -0.016 4.016 19 Cl -0.045 7.045 20 C -0.123 4.123 21 C -0.067 4.067 22 C -0.137 4.137 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.007 1.007 26 H 0.350 0.650 27 H 0.337 0.663 28 H 0.235 0.765 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -14.404 -4.082 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.086 0.914 9 C -0.026 4.026 10 C 0.063 3.937 11 H 0.087 0.913 12 N -0.356 5.356 13 C -0.175 4.175 14 C -0.049 4.049 15 O -0.097 6.097 16 C -0.006 4.006 17 C -0.118 4.118 18 C -0.042 4.042 19 Cl -0.016 7.016 20 C -0.141 4.141 21 C -0.086 4.086 22 C -0.138 4.138 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.011 0.989 26 H 0.163 0.837 27 H 0.149 0.851 28 H 0.251 0.749 29 H 0.180 0.820 30 H 0.179 0.821 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.365 -15.271 -4.324 15.930 hybrid contribution -0.550 2.108 0.131 2.182 sum 0.815 -13.164 -4.193 13.839 Atomic orbital electron populations 1.70120 1.07945 1.27644 1.51507 1.25921 0.95561 1.03244 0.94678 0.85428 0.79360 0.78983 0.77447 1.18119 1.20994 1.20710 1.21582 0.93554 0.91542 1.50574 0.91386 1.19645 0.94552 0.93400 0.95008 1.19512 0.92718 0.87954 0.93556 0.91257 1.59187 1.27353 1.45894 1.03157 1.21352 1.05353 0.99173 0.91577 1.24102 0.95629 0.84844 1.00281 1.83980 1.64672 1.42363 1.18636 1.19540 1.01696 0.96745 0.82590 1.19782 1.02885 1.00717 0.88374 1.20445 1.00773 0.93838 0.89187 1.98369 1.83518 1.65061 1.54677 1.20857 0.98917 0.92942 1.01404 1.20458 0.98280 0.99699 0.90134 1.20187 1.02473 0.96091 0.95078 0.92907 0.99660 0.98913 0.83673 0.85149 0.74898 0.82047 0.82073 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.53 -28.21 8.55 25.60 0.22 -27.99 16 8 H 0.07 3.38 7.14 -2.91 -0.02 3.36 16 9 C 0.01 0.63 4.60 29.85 0.14 0.77 16 10 C 0.17 6.93 3.28 44.17 0.14 7.08 16 11 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 12 N -0.83 -28.18 8.96 -171.80 -1.54 -29.72 16 13 C -0.17 -6.30 5.47 -18.59 -0.10 -6.40 16 14 C 0.02 0.49 11.27 66.85 0.75 1.24 16 15 O -0.20 -6.16 10.58 -9.08 -0.10 -6.25 16 16 C 0.04 1.34 7.42 22.99 0.17 1.51 16 17 C -0.10 -2.57 9.84 22.37 0.22 -2.35 16 18 C -0.02 -0.38 6.31 22.35 0.14 -0.24 16 19 Cl -0.05 -0.92 28.93 -2.72 -0.08 -0.99 16 20 C -0.12 -3.15 9.75 22.06 0.22 -2.93 16 21 C -0.07 -2.11 10.05 22.20 0.22 -1.89 16 22 C -0.14 -4.79 6.38 -20.21 -0.13 -4.92 16 23 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 24 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.35 12.15 7.90 -89.69 -0.71 11.44 16 27 H 0.34 10.49 8.00 -89.69 -0.72 9.77 16 28 H 0.23 5.63 7.34 -2.91 -0.02 5.61 16 29 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -62.55 288.30 2.81 -59.75 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.25 Total: 23.10 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 2.46 Total: -35.44 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.25 Total: -84.68 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.10 Total: -6.25 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -0.99 kcal Total: -62.55 2.81 -59.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.662 kcal (2) G-P(sol) polarization free energy of solvation -62.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds