Wall clock time and date at job start Mon Mar 30 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99900 * 2 1 4 4 H 1.48505 * 109.46873 * 240.00282 * 3 2 1 5 5 H 1.48503 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46950 * 120.00361 * 3 2 1 7 7 C 1.37877 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46909 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47072 * 54.99945 * 10 9 7 12 12 N 1.46896 * 109.47012 * 294.99857 * 10 9 7 13 13 C 1.50697 * 109.46752 * 174.99469 * 10 9 7 14 14 C 1.33984 * 126.90249 * 99.97990 * 13 10 9 15 15 O 1.34471 * 110.15504 * 179.97438 * 14 13 10 16 16 C 1.34806 * 110.88468 * 359.97438 * 15 14 13 17 17 C 1.38934 * 133.47902 * 180.02562 * 16 15 14 18 18 C 1.37961 * 119.80865 * 179.97438 * 17 16 15 19 19 Cl 1.73599 * 119.67228 * 180.02562 * 18 17 16 20 20 C 1.38848 * 120.65433 * 0.02721 * 18 17 16 21 21 C 1.36730 * 120.40708 * 359.93787 * 20 18 17 22 22 C 1.39406 * 119.73317 * 0.07293 * 21 20 18 23 23 H 0.96996 * 119.99510 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47069 * 59.99516 * 9 7 2 25 25 H 1.09000 * 109.46516 * 299.99401 * 9 7 2 26 26 H 1.00899 * 111.00034 * 176.04521 * 12 10 9 27 27 H 1.00906 * 111.00053 * 299.99890 * 12 10 9 28 28 H 1.08001 * 124.92566 * 359.73058 * 14 13 10 29 29 H 1.07998 * 120.09710 * 359.95633 * 17 16 15 30 30 H 1.08002 * 119.79478 * 179.97438 * 20 18 17 31 31 H 1.08001 * 120.13357 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5552 0.8424 12 7 3.0084 -3.6539 -1.2547 13 6 1.4960 -4.9636 0.1245 14 6 1.1865 -5.8113 -0.8659 15 8 0.5139 -6.8684 -0.3778 16 6 0.3526 -6.7611 0.9563 17 6 -0.2552 -7.5641 1.9134 18 6 -0.2555 -7.1733 3.2365 19 17 -1.0153 -8.1797 4.4296 20 6 0.3458 -5.9830 3.6233 21 6 0.9496 -5.1796 2.6963 22 6 0.9595 -5.5583 1.3547 23 1 -0.4849 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 3.7161 -4.3731 -1.2523 27 1 2.3961 -3.7518 -2.0507 28 1 1.4372 -5.6648 -1.9061 29 1 -0.7262 -8.4914 1.6225 30 1 0.3369 -5.6904 4.6629 31 1 1.4163 -4.2549 3.0021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:04 Heat of formation + Delta-G solvation = -5.337730 kcal Electronic energy + Delta-G solvation = -17094.496725 eV Core-core repulsion = 14173.916038 eV Total energy + Delta-G solvation = -2920.580687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.54861 -39.22074 -37.69849 -37.31332 -34.67466 -32.83519 -31.57523 -30.35287 -29.83105 -26.36894 -24.55989 -23.36550 -23.22884 -20.70622 -18.71681 -18.36107 -17.97112 -17.25761 -17.15082 -16.75313 -16.30160 -15.36171 -15.33809 -14.99502 -14.67689 -14.25095 -14.15056 -13.90529 -13.23182 -13.08831 -12.72392 -12.60566 -12.46146 -12.39930 -12.16251 -11.92257 -11.74417 -11.22922 -10.70960 -10.49713 -9.73865 -9.54012 -9.13592 -8.10942 -6.17614 -0.29798 0.16364 0.84153 1.24828 1.44432 1.46838 1.54567 1.87088 2.46931 2.50213 3.22467 3.42330 3.53180 3.73578 3.90495 4.03343 4.19904 4.30625 4.35584 4.53137 4.71811 4.91283 4.97452 5.06716 5.21590 5.30654 5.41972 5.47888 5.67320 5.86704 6.00354 6.29137 6.48034 6.81801 6.96742 7.49446 9.00651 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.004749 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.669605 B = 5894.956364 C = 6631.618890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.048 3.952 10 C 0.181 3.819 11 H 0.071 0.929 12 N -0.827 5.827 13 C -0.209 4.209 14 C 0.005 3.995 15 O -0.193 6.193 16 C 0.043 3.957 17 C -0.100 4.100 18 C -0.014 4.014 19 Cl -0.045 7.045 20 C -0.123 4.123 21 C -0.066 4.066 22 C -0.136 4.136 23 H 0.259 0.741 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.345 0.655 27 H 0.342 0.658 28 H 0.236 0.764 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -16.618 4.251 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.010 3.990 10 C 0.069 3.931 11 H 0.089 0.911 12 N -0.357 5.357 13 C -0.212 4.212 14 C -0.059 4.059 15 O -0.095 6.095 16 C -0.005 4.005 17 C -0.119 4.119 18 C -0.041 4.041 19 Cl -0.016 7.016 20 C -0.142 4.142 21 C -0.084 4.084 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.159 0.841 27 H 0.155 0.845 28 H 0.252 0.748 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.181 -16.069 4.409 16.705 hybrid contribution -0.347 0.203 -0.094 0.413 sum 0.834 -15.866 4.315 16.464 Atomic orbital electron populations 1.70105 1.07687 1.27353 1.52970 1.25884 0.95584 1.02971 0.95545 0.85582 0.78192 0.78693 0.79008 1.19471 1.21441 1.19409 1.21469 0.93505 0.91290 1.48245 0.91909 1.18899 0.93160 0.92323 0.94572 1.19679 0.92961 0.87532 0.92959 0.91053 1.58648 1.18150 1.55756 1.03117 1.22649 1.06168 1.00316 0.92088 1.24113 0.96352 0.85396 1.00068 1.83974 1.63427 1.42443 1.19636 1.19565 1.01578 0.96521 0.82859 1.19784 1.02349 1.01091 0.88650 1.20455 1.00195 0.93947 0.89495 1.98372 1.79952 1.67924 1.55313 1.20873 0.98821 0.92987 1.01476 1.20476 0.97904 0.99692 0.90363 1.20220 1.02364 0.95909 0.95330 0.93214 0.99215 0.99200 0.84139 0.84471 0.74802 0.82062 0.82126 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.51 -28.25 8.84 25.60 0.23 -28.02 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.05 2.45 4.60 29.85 0.14 2.59 16 10 C 0.18 7.06 3.22 44.17 0.14 7.20 16 11 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 12 N -0.83 -27.46 8.65 -171.80 -1.49 -28.95 16 13 C -0.21 -7.16 5.49 -18.60 -0.10 -7.26 16 14 C 0.00 0.14 11.23 66.85 0.75 0.89 16 15 O -0.19 -5.75 10.58 -9.12 -0.10 -5.85 16 16 C 0.04 1.30 7.42 22.99 0.17 1.47 16 17 C -0.10 -2.52 9.84 22.37 0.22 -2.30 16 18 C -0.01 -0.34 6.31 22.35 0.14 -0.20 16 19 Cl -0.04 -0.89 28.93 -2.72 -0.08 -0.97 16 20 C -0.12 -3.12 9.75 22.06 0.22 -2.90 16 21 C -0.07 -2.04 10.05 22.20 0.22 -1.82 16 22 C -0.14 -4.62 6.38 -20.21 -0.13 -4.75 16 23 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.34 9.05 9.06 -89.70 -0.81 8.24 16 27 H 0.34 10.43 8.04 -89.69 -0.72 9.71 16 28 H 0.24 4.79 7.34 -2.91 -0.02 4.77 16 29 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 30 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -66.33 290.00 2.75 -63.57 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.36 Total: 17.31 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 2.46 Total: -34.84 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.20 Total: -85.95 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.10 Total: -5.85 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -66.33 2.75 -63.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.237 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds