Wall clock time and date at job start Mon Mar 30 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37472 * 123.35391 * 2 1 4 4 C 1.33819 * 115.10415 * 179.97438 * 3 2 1 5 5 S 1.70613 * 110.95390 * 359.73031 * 4 3 2 6 6 C 1.36654 * 123.35228 * 179.97438 * 2 1 3 7 7 C 1.46582 * 125.45439 * 0.02562 * 6 2 1 8 8 O 1.21698 * 120.00528 * 5.35149 * 7 6 2 9 9 N 1.34773 * 119.99662 * 185.35384 * 7 6 2 10 10 C 1.47426 * 125.65166 * 175.11593 * 9 7 6 11 11 C 1.55121 * 104.94732 * 204.04115 * 10 9 7 12 12 C 1.55162 * 101.48261 * 323.21954 * 11 10 9 13 13 H 1.09002 * 110.71936 * 276.83491 * 12 11 10 14 14 C 1.50698 * 110.71934 * 153.73564 * 12 11 10 15 15 H 1.07994 * 120.00368 * 2.44007 * 14 12 11 16 16 C 1.37881 * 120.00009 * 182.71510 * 14 12 11 17 17 N 1.31520 * 119.99827 * 359.72476 * 16 14 12 18 18 Si 1.86791 * 120.00287 * 179.72669 * 16 14 12 19 19 H 1.48494 * 109.47308 * 89.99757 * 18 16 14 20 20 H 1.48500 * 109.47283 * 210.00073 * 18 16 14 21 21 H 1.48500 * 109.46882 * 329.99737 * 18 16 14 22 22 C 1.47024 * 125.64963 * 355.15337 * 9 7 6 23 23 H 1.09000 * 109.46851 * 270.01942 * 1 2 3 24 24 H 1.08998 * 109.47081 * 30.01593 * 1 2 3 25 25 H 1.08999 * 109.47383 * 150.02128 * 1 2 3 26 26 H 1.08000 * 122.44507 * 359.95948 * 3 2 1 27 27 H 1.08002 * 124.52114 * 180.02562 * 4 3 2 28 28 H 1.09005 * 110.36052 * 322.99745 * 10 9 7 29 29 H 1.08996 * 110.37193 * 85.20957 * 10 9 7 30 30 H 1.08998 * 111.16222 * 205.12934 * 11 10 9 31 31 H 1.09006 * 110.94001 * 81.20672 * 11 10 9 32 32 H 0.96995 * 120.00307 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.87985 * 59.48982 * 22 9 7 34 34 H 1.08991 * 110.01345 * 298.39902 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5872 0.9563 0.0005 5 16 3.9624 -0.7081 0.0086 6 6 2.2583 -1.1415 0.0005 7 6 1.7284 -2.5082 0.0006 8 8 0.5301 -2.6963 -0.0981 9 7 2.5683 -3.5565 0.1100 10 6 2.1672 -4.9705 0.2255 11 6 3.3624 -5.6695 0.9248 12 6 4.5680 -4.9187 0.3000 13 1 4.8293 -5.3467 -0.6678 14 6 5.7532 -4.9458 1.2304 15 1 5.6921 -5.4792 2.1674 16 6 6.9138 -4.2849 0.8879 17 7 6.9883 -3.6353 -0.2533 18 14 8.3803 -4.3121 2.0445 19 1 9.2429 -5.4772 1.7229 20 1 9.1608 -3.0590 1.8839 21 1 7.9030 -4.4216 3.4464 22 6 4.0363 -3.4794 0.1348 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8201 2.1334 -0.0006 27 1 4.3206 1.7491 0.0010 28 1 1.2660 -5.0608 0.8320 29 1 2.0032 -5.4002 -0.7627 30 1 3.3946 -6.7314 0.6811 31 1 3.3249 -5.5188 2.0037 32 1 7.8048 -3.1706 -0.4944 33 1 4.3611 -2.8656 0.9750 34 1 4.4033 -3.0535 -0.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:11 Heat of formation + Delta-G solvation = -24.891630 kcal Electronic energy + Delta-G solvation = -18035.730842 eV Core-core repulsion = 15252.179036 eV Total energy + Delta-G solvation = -2783.551807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04970 -39.23276 -37.97060 -34.86181 -32.68934 -31.76291 -30.14992 -28.76244 -26.83649 -24.83665 -23.82908 -21.89109 -21.31360 -19.20960 -18.87013 -18.41698 -17.21553 -16.94357 -16.40082 -16.32204 -15.60346 -15.18544 -14.51091 -14.42924 -14.22242 -14.00260 -13.64735 -13.43362 -13.30859 -13.27759 -12.95252 -12.78093 -12.70657 -12.39984 -12.32994 -11.87460 -11.33397 -11.16726 -11.03316 -10.86386 -10.52262 -9.89535 -9.60056 -9.23600 -8.13269 -6.23039 -0.40775 0.64331 1.13608 1.42788 1.45486 1.48760 1.56644 2.06895 2.15550 2.46338 3.18468 3.59924 4.00488 4.08521 4.17814 4.30517 4.31333 4.43977 4.60436 4.62144 4.68694 4.81871 4.95343 5.03569 5.05572 5.11403 5.17269 5.29101 5.43858 5.48592 5.57984 5.69262 5.86996 6.27972 6.54639 6.83297 7.07234 7.45448 8.95771 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.007409 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.265423 B = 3778.524426 C = 4866.376856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.030 4.030 3 C -0.154 4.154 4 C -0.245 4.245 5 S 0.221 5.779 6 C -0.311 4.311 7 C 0.592 3.408 8 O -0.572 6.572 9 N -0.619 5.619 10 C 0.109 3.891 11 C -0.117 4.117 12 C 0.040 3.960 13 H 0.021 0.979 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.026 3.974 17 N -0.908 5.908 18 Si 0.947 3.053 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.125 3.875 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.173 0.827 27 H 0.193 0.807 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.056 0.944 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 7.760 0.662 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.046 4.046 3 C -0.185 4.185 4 C -0.383 4.383 5 S 0.492 5.508 6 C -0.431 4.431 7 C 0.383 3.617 8 O -0.456 6.456 9 N -0.351 5.351 10 C -0.013 4.013 11 C -0.155 4.155 12 C 0.021 3.979 13 H 0.039 0.961 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.175 4.175 17 N -0.545 5.545 18 Si 0.774 3.226 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.195 1.195 22 C 0.001 3.999 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.087 0.913 26 H 0.190 0.810 27 H 0.210 0.790 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.504 7.015 0.501 8.931 hybrid contribution -0.097 0.837 0.330 0.905 sum -5.602 7.852 0.831 9.681 Atomic orbital electron populations 1.20705 0.88035 1.03963 1.03116 1.19870 0.98522 0.90523 0.95725 1.20100 0.92288 0.99898 1.06174 1.26093 1.01574 1.03857 1.06761 1.84795 1.02522 0.97199 1.66329 1.24467 0.98757 0.96950 1.22929 1.16933 0.85077 0.83308 0.76388 1.90658 1.15138 1.85833 1.53957 1.48823 1.08503 1.07233 1.70553 1.22338 0.98489 0.79725 1.00739 1.22850 0.93213 0.99811 0.99599 1.19646 0.92740 0.89442 0.96111 0.96074 1.21295 0.97520 1.33234 1.05019 0.92133 1.25643 1.00770 0.94733 0.96383 1.70026 1.28392 1.33539 1.22589 0.85712 0.79746 0.77483 0.79696 1.20309 1.20922 1.19493 1.22265 0.75792 1.01853 0.99958 0.90503 0.88906 0.91252 0.80964 0.79010 0.90549 0.91265 0.89002 0.91603 0.92631 0.92553 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.71 9.62 71.24 0.69 -2.02 16 2 C -0.03 -0.93 5.90 -20.42 -0.12 -1.05 16 3 C -0.15 -3.92 9.97 21.08 0.21 -3.71 16 4 C -0.25 -6.50 10.92 66.81 0.73 -5.77 16 5 S 0.22 7.77 18.47 -56.49 -1.04 6.73 16 6 C -0.31 -11.69 6.38 24.08 0.15 -11.54 16 7 C 0.59 24.96 7.79 86.42 0.67 25.64 16 8 O -0.57 -25.23 14.52 -4.34 -0.06 -25.29 16 9 N -0.62 -26.10 3.33 -816.18 -2.72 -28.82 16 10 C 0.11 4.05 6.89 86.93 0.60 4.65 16 11 C -0.12 -4.43 6.52 32.06 0.21 -4.22 16 12 C 0.04 1.86 2.83 -10.35 -0.03 1.83 16 13 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 14 C -0.53 -26.89 8.39 25.60 0.21 -26.68 16 15 H 0.06 3.01 7.77 -2.91 -0.02 2.98 16 16 C 0.03 1.30 5.34 84.65 0.45 1.76 16 17 N -0.91 -47.73 12.57 21.45 0.27 -47.46 16 18 Si 0.95 40.52 29.54 68.60 2.03 42.55 16 19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.12 5.64 3.92 86.73 0.34 5.98 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.26 5.90 -2.39 -0.01 2.24 16 26 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 27 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 28 H 0.08 2.67 8.09 -2.38 -0.02 2.65 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.07 2.50 8.03 -2.38 -0.02 2.48 16 32 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.06 2.69 6.32 -2.42 -0.02 2.68 16 34 H 0.05 2.54 7.10 -2.39 -0.02 2.52 16 Total: -1.00 -58.83 292.57 3.69 -55.14 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.10 Total: 12.31 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.12 Total: -15.15 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.45 Total: -76.28 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -1.04 Total: 6.73 kcal Total: -58.83 3.69 -55.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.245 kcal (2) G-P(sol) polarization free energy of solvation -58.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds