Wall clock time and date at job start Mon Mar 30 2020 06:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37467 * 123.35630 * 2 1 4 4 C 1.33815 * 115.10425 * 180.29710 * 3 2 1 5 5 S 1.70615 * 110.95548 * 359.72792 * 4 3 2 6 6 C 1.36654 * 123.35202 * 179.78299 * 2 1 3 7 7 C 1.46585 * 125.45608 * 359.97438 * 6 2 1 8 8 O 1.21705 * 119.99865 * 4.97727 * 7 6 2 9 9 N 1.34769 * 120.00146 * 184.96826 * 7 6 2 10 10 C 1.47428 * 125.65136 * 174.86531 * 9 7 6 11 11 C 1.54911 * 104.83113 * 155.90896 * 10 9 7 12 12 C 1.55155 * 101.58119 * 37.01061 * 11 10 9 13 13 H 1.08998 * 110.71414 * 83.04173 * 12 11 10 14 14 C 1.50703 * 110.71721 * 206.13041 * 12 11 10 15 15 H 1.08003 * 120.00247 * 357.56613 * 14 12 11 16 16 C 1.37879 * 119.99527 * 177.55971 * 14 12 11 17 17 N 1.31514 * 120.00336 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99527 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47105 * 239.99928 * 18 16 14 21 21 H 1.48505 * 109.46821 * 120.00391 * 18 16 14 22 22 C 1.47320 * 125.61622 * 355.09115 * 9 7 6 23 23 H 1.09003 * 109.46901 * 270.21399 * 1 2 3 24 24 H 1.08995 * 109.46889 * 30.21297 * 1 2 3 25 25 H 1.09001 * 109.47378 * 150.21801 * 1 2 3 26 26 H 1.08000 * 122.45048 * 0.02562 * 3 2 1 27 27 H 1.08001 * 124.52435 * 179.75013 * 4 3 2 28 28 H 1.09007 * 110.36115 * 37.07251 * 10 9 7 29 29 H 1.08998 * 110.46111 * 274.79741 * 10 9 7 30 30 H 1.09005 * 111.00444 * 278.93839 * 11 10 9 31 31 H 1.08999 * 111.03262 * 155.10249 * 11 10 9 32 32 H 0.96998 * 119.99959 * 359.97438 * 17 16 14 33 33 H 1.09008 * 110.06221 * 61.67526 * 22 9 7 34 34 H 1.09000 * 109.85132 * 300.42158 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1482 0.0000 4 6 3.5871 0.9562 -0.0063 5 16 3.9623 -0.7082 -0.0051 6 6 2.2583 -1.1415 0.0043 7 6 1.7284 -2.5082 0.0100 8 8 0.5294 -2.6963 -0.0802 9 7 2.5689 -3.5564 0.1150 10 6 2.1685 -4.9697 0.2405 11 6 3.3828 -5.7742 -0.2868 12 6 4.5706 -4.9236 0.2357 13 1 4.7984 -5.1747 1.2715 14 6 5.7854 -5.1119 -0.6361 15 1 5.7524 -5.8016 -1.4666 16 6 6.9388 -4.4036 -0.3735 17 7 6.9790 -3.5640 0.6379 18 14 8.4443 -4.6365 -1.4546 19 1 8.1421 -5.6290 -2.5170 20 1 9.5767 -5.1252 -0.6276 21 1 8.8108 -3.3398 -2.0789 22 6 4.0400 -3.4785 0.1281 23 1 -0.3633 0.0038 1.0277 24 1 -0.3633 0.8880 -0.5171 25 1 -0.3634 -0.8919 -0.5104 26 1 1.8202 2.1334 0.0004 27 1 4.3206 1.7489 -0.0111 28 1 1.2873 -5.1698 -0.3691 29 1 1.9722 -5.2190 1.2832 30 1 3.3811 -5.8152 -1.3761 31 1 3.4028 -6.7770 0.1398 32 1 6.1971 -3.4428 1.1990 33 1 4.3760 -2.8954 0.9856 34 1 4.3947 -3.0212 -0.7956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259666737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:13 Heat of formation + Delta-G solvation = -12.844677 kcal Electronic energy + Delta-G solvation = -18074.393523 eV Core-core repulsion = 15291.364112 eV Total energy + Delta-G solvation = -2783.029412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61722 -37.97790 -36.57439 -33.26569 -31.15474 -30.50273 -28.36961 -27.43647 -24.89579 -23.46492 -22.43727 -20.43593 -20.00816 -17.99147 -17.56809 -16.88241 -15.88051 -15.36945 -15.09552 -14.41943 -13.93578 -13.79680 -13.36845 -13.14382 -12.98652 -12.44317 -12.19320 -12.10870 -12.00639 -11.84478 -11.61100 -11.37003 -10.88372 -10.82509 -10.54264 -10.19951 -9.96019 -9.72088 -9.47553 -8.73306 -8.59409 -8.54356 -8.28900 -7.91132 -6.51176 -4.26067 0.82146 1.87353 2.29884 2.60720 3.36866 3.38119 3.47389 3.52911 3.55791 4.40218 4.97041 5.07830 5.16987 5.41530 5.46638 5.58114 5.64839 5.70752 5.73657 5.88409 6.02798 6.07274 6.13896 6.20597 6.41250 6.54116 6.55067 6.61891 6.70093 6.76098 6.91070 7.32168 7.95366 8.02738 8.27885 8.53438 8.69497 9.45093 10.85876 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.007326 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.450587 B = 3821.233267 C = 4901.326897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.035 4.035 3 C -0.155 4.155 4 C -0.263 4.263 5 S 0.265 5.735 6 C -0.276 4.276 7 C 0.599 3.401 8 O -0.550 6.550 9 N -0.611 5.611 10 C 0.108 3.892 11 C -0.121 4.121 12 C 0.032 3.968 13 H 0.035 0.965 14 C -0.595 4.595 15 H 0.057 0.943 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.071 2.929 19 H -0.288 1.288 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.090 3.910 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.270 0.730 33 H 0.061 0.939 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 5.976 -0.624 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.051 4.051 3 C -0.186 4.186 4 C -0.401 4.401 5 S 0.536 5.464 6 C -0.396 4.396 7 C 0.388 3.612 8 O -0.432 6.432 9 N -0.343 5.343 10 C -0.014 4.014 11 C -0.159 4.159 12 C 0.013 3.987 13 H 0.053 0.947 14 C -0.633 4.633 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.541 5.541 18 Si 0.900 3.100 19 H -0.214 1.214 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.034 4.034 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.153 0.847 27 H 0.180 0.820 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.220 5.626 -0.896 7.090 hybrid contribution -2.646 0.684 0.307 2.750 sum -6.866 6.310 -0.589 9.343 Atomic orbital electron populations 1.20683 0.89233 1.03589 1.02530 1.19399 0.97476 0.90474 0.97773 1.19774 0.92603 0.99110 1.07161 1.25761 1.00671 1.05044 1.08631 1.84520 1.02260 0.94600 1.65057 1.24511 0.98173 0.97209 1.19753 1.16600 0.85275 0.82474 0.76807 1.90691 1.14499 1.85260 1.52753 1.48719 1.08453 1.06492 1.70650 1.22235 0.98610 0.80217 1.00350 1.22784 0.94056 0.98096 1.00966 1.19855 0.93393 0.87824 0.97632 0.94651 1.21954 0.96916 1.28495 1.15903 0.92495 1.25860 1.01284 0.93149 0.97960 1.70792 1.33439 1.33901 1.15925 0.83490 0.75083 0.76213 0.75245 1.21424 1.21211 1.21216 1.23035 0.76334 1.02848 1.01155 0.91305 0.92137 0.88885 0.84677 0.82021 0.91219 0.92120 0.91260 0.91118 0.91799 0.92076 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.61 36.01 0.35 -1.12 16 2 C -0.04 -0.58 5.90 -105.48 -0.62 -1.20 16 3 C -0.16 -2.21 9.97 -41.41 -0.41 -2.62 16 4 C -0.26 -3.80 10.92 29.18 0.32 -3.49 16 5 S 0.26 4.61 18.46 -107.50 -1.98 2.63 16 6 C -0.28 -5.14 6.38 -36.79 -0.23 -5.37 16 7 C 0.60 12.32 7.80 -12.90 -0.10 12.22 16 8 O -0.55 -11.91 14.46 5.18 0.07 -11.84 16 9 N -0.61 -12.52 3.33 -171.85 -0.57 -13.10 16 10 C 0.11 2.01 6.93 -2.53 -0.02 1.99 16 11 C -0.12 -2.34 6.50 -24.58 -0.16 -2.50 16 12 C 0.03 0.74 2.46 -89.94 -0.22 0.52 16 13 H 0.04 0.85 8.00 -51.93 -0.42 0.44 16 14 C -0.59 -15.16 8.38 -34.44 -0.29 -15.45 16 15 H 0.06 1.46 7.77 -52.48 -0.41 1.05 16 16 C 0.02 0.59 5.34 -17.82 -0.10 0.50 16 17 N -0.90 -24.52 13.45 55.43 0.75 -23.77 16 18 Si 1.07 23.43 29.90 -169.99 -5.08 18.34 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.09 1.95 3.78 -2.91 -0.01 1.94 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.53 5.91 -51.93 -0.31 1.23 16 26 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 27 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 28 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.36 8.03 -51.93 -0.42 0.95 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.27 7.20 5.63 -40.82 -0.23 6.97 16 33 H 0.06 1.35 5.70 -51.92 -0.30 1.06 16 34 H 0.07 1.73 6.69 -51.93 -0.35 1.38 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -28.31 289.33 -8.13 -36.44 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.17 Total: 1.51 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.50 Total: -14.58 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.17 Total: -36.87 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.08 Total: 18.34 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.98 Total: 2.63 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.31 -8.13 -36.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.597 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds