Wall clock time and date at job start Mon Mar 30 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29195 * 124.82400 * 2 1 4 4 C 1.31337 * 117.29128 * 179.74873 * 3 2 1 5 5 C 1.50706 * 122.87797 * 180.31445 * 4 3 2 6 6 C 1.35091 * 114.24352 * 0.51525 * 4 3 2 7 7 C 1.47789 * 126.10958 * 179.78446 * 6 4 3 8 8 N 1.31014 * 126.44084 * 359.70584 * 7 6 4 9 9 O 1.21296 * 110.04389 * 179.72038 * 8 7 6 10 10 C 1.33682 * 110.07436 * 0.46685 * 9 8 7 11 11 C 1.50697 * 126.40031 * 179.79741 * 10 9 8 12 12 C 1.50700 * 109.47266 * 269.68674 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.30932 * 107.19328 * 359.53586 * 10 9 8 21 21 S 1.70952 * 124.81741 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47318 * 269.96176 * 1 2 3 23 23 H 1.09006 * 109.46835 * 29.95866 * 1 2 3 24 24 H 1.08998 * 109.47091 * 149.95700 * 1 2 3 25 25 H 1.09004 * 109.46466 * 270.22766 * 5 4 3 26 26 H 1.08997 * 109.47206 * 30.22032 * 5 4 3 27 27 H 1.08996 * 109.47443 * 150.22756 * 5 4 3 28 28 H 1.09004 * 109.47205 * 149.68768 * 11 10 9 29 29 H 1.08997 * 109.47395 * 29.69260 * 11 10 9 30 30 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2448 1.0606 0.0000 4 6 3.5468 0.8884 0.0051 5 6 4.5237 2.0359 0.0127 6 6 3.9353 -0.4054 -0.0013 7 6 5.3293 -0.8962 -0.0023 8 7 6.4134 -0.1606 -0.0025 9 8 7.3972 -0.8700 0.0022 10 6 7.0351 -2.1568 -0.0043 11 6 7.9604 -3.3462 -0.0057 12 6 8.2678 -3.7418 -1.4270 13 1 7.8366 -3.1871 -2.2473 14 6 9.0996 -4.8119 -1.6803 15 7 9.6290 -5.4840 -0.6815 16 14 9.4812 -5.3018 -3.4420 17 1 8.7717 -4.3892 -4.3743 18 1 10.9448 -5.2089 -3.6757 19 1 9.0300 -6.6970 -3.6767 20 7 5.7262 -2.1905 -0.0034 21 16 2.4831 -1.4035 -0.0006 22 1 -0.3634 -0.0007 1.0276 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3633 -0.8896 -0.5145 25 1 4.7605 2.3181 -1.0132 26 1 4.0809 2.8867 0.5305 27 1 5.4363 1.7329 0.5260 28 1 7.4814 -4.1799 0.5079 29 1 8.8863 -3.0869 0.5076 30 1 10.2139 -6.2371 -0.8597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259700434.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:45 Heat of formation + Delta-G solvation = 97.585042 kcal Electronic energy + Delta-G solvation = -16831.064006 eV Core-core repulsion = 13949.282843 eV Total energy + Delta-G solvation = -2881.781163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.83821 -39.97532 -35.44299 -34.16088 -33.06929 -31.75880 -29.40483 -28.47695 -28.02172 -24.10562 -23.37326 -22.84847 -21.65751 -19.04585 -17.66593 -17.60884 -16.67820 -16.31409 -15.46224 -15.29161 -14.77885 -13.95131 -13.48094 -13.46152 -13.34458 -12.79912 -12.54584 -12.31090 -12.24246 -12.10129 -11.59466 -11.45828 -11.24204 -11.04954 -10.85196 -10.44516 -10.23634 -10.08143 -9.76004 -9.42357 -9.02553 -8.66396 -8.44211 -6.29773 -4.35737 0.30222 1.14343 1.66440 1.89279 2.51778 3.13926 3.20506 3.28608 3.33839 3.60932 3.83828 4.05892 4.28760 4.59838 4.80280 5.08392 5.14954 5.20143 5.28936 5.54943 5.63047 5.69989 5.78687 5.86159 6.28120 6.41968 6.53104 7.04926 7.10911 7.61214 7.63786 7.85667 8.64809 8.75615 9.29648 10.80640 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030505 B = 0.004514 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.676439 B = 6201.428405 C = 6628.296716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.031 3.969 3 N -0.473 5.473 4 C 0.105 3.895 5 C -0.083 4.083 6 C -0.162 4.162 7 C 0.230 3.770 8 N -0.387 5.387 9 O 0.068 5.932 10 C 0.249 3.751 11 C 0.100 3.900 12 C -0.525 4.525 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.501 5.501 21 S 0.207 5.793 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 8.884 2.302 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.246 4.246 3 N -0.188 5.188 4 C -0.033 4.033 5 C -0.142 4.142 6 C -0.285 4.285 7 C -0.041 4.041 8 N -0.100 5.100 9 O 0.011 5.989 10 C 0.031 3.969 11 C 0.061 3.939 12 C -0.564 4.564 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.235 5.235 21 S 0.463 5.537 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.617 8.780 2.352 17.213 hybrid contribution 0.988 0.204 -0.950 1.386 sum -13.629 8.984 1.402 16.384 Atomic orbital electron populations 1.20446 0.84855 1.04314 1.03965 1.27258 1.02082 0.92103 1.03128 1.66101 1.03969 1.31702 1.17049 1.20495 0.90231 0.93387 0.99223 1.20514 0.96418 0.93827 1.03422 1.22534 0.93216 0.95775 1.17003 1.22359 0.92308 0.86610 1.02826 1.74877 0.93943 1.18456 1.22711 1.85264 1.30007 1.17553 1.66102 1.30101 0.90968 0.87372 0.88452 1.18283 0.91341 0.83939 1.00346 1.20822 1.30220 1.15376 0.89979 0.91955 1.24922 0.95016 0.95559 0.98135 1.69930 1.31350 1.20130 1.31004 0.86291 0.78258 0.78554 0.83557 1.19571 1.20553 1.20593 1.72157 1.09801 1.17785 1.23762 1.84130 0.94339 1.09090 1.66094 0.89443 0.89214 0.89905 0.90369 0.90642 0.89166 0.91148 0.92097 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 36.01 0.38 -0.21 16 2 C 0.03 0.38 7.38 -13.39 -0.10 0.28 16 3 N -0.47 -7.00 10.51 -7.80 -0.08 -7.08 16 4 C 0.10 1.67 6.78 -83.92 -0.57 1.10 16 5 C -0.08 -1.16 9.81 36.01 0.35 -0.81 16 6 C -0.16 -2.85 6.52 -36.80 -0.24 -3.09 16 7 C 0.23 4.67 7.95 -156.05 -1.24 3.43 16 8 N -0.39 -7.82 9.85 30.99 0.31 -7.51 16 9 O 0.07 1.44 11.29 18.00 0.20 1.64 16 10 C 0.25 5.56 7.68 -12.98 -0.10 5.46 16 11 C 0.10 2.39 5.60 -29.04 -0.16 2.23 16 12 C -0.53 -13.90 9.09 -34.44 -0.31 -14.21 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 16 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 N -0.50 -11.09 11.58 -9.88 -0.11 -11.21 16 21 S 0.21 2.92 23.17 -107.50 -2.49 0.43 16 22 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.36 6.12 -51.93 -0.32 1.04 16 28 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 29 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -29.22 286.43 -7.06 -36.28 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: -2.82 Total: -4.73 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.09 Total: -4.13 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.85 Total: -49.31 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.49 Total: 0.43 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.22 -7.06 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700434.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.861 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds