Wall clock time and date at job start Mon Mar 30 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29195 * 124.82400 * 2 1 4 4 C 1.31337 * 117.29128 * 179.74873 * 3 2 1 5 5 C 1.50706 * 122.87797 * 180.31445 * 4 3 2 6 6 C 1.35091 * 114.24352 * 0.51525 * 4 3 2 7 7 C 1.47789 * 126.10958 * 179.78446 * 6 4 3 8 8 N 1.31014 * 126.44084 * 359.70584 * 7 6 4 9 9 O 1.21296 * 110.04389 * 179.72038 * 8 7 6 10 10 C 1.33682 * 110.07436 * 0.46685 * 9 8 7 11 11 C 1.50697 * 126.40031 * 179.79741 * 10 9 8 12 12 C 1.50700 * 109.47266 * 269.68674 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.30932 * 107.19328 * 359.53586 * 10 9 8 21 21 S 1.70952 * 124.81741 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47318 * 269.96176 * 1 2 3 23 23 H 1.09006 * 109.46835 * 29.95866 * 1 2 3 24 24 H 1.08998 * 109.47091 * 149.95700 * 1 2 3 25 25 H 1.09004 * 109.46466 * 270.22766 * 5 4 3 26 26 H 1.08997 * 109.47206 * 30.22032 * 5 4 3 27 27 H 1.08996 * 109.47443 * 150.22756 * 5 4 3 28 28 H 1.09004 * 109.47205 * 149.68768 * 11 10 9 29 29 H 1.08997 * 109.47395 * 29.69260 * 11 10 9 30 30 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2448 1.0606 0.0000 4 6 3.5468 0.8884 0.0051 5 6 4.5237 2.0359 0.0127 6 6 3.9353 -0.4054 -0.0013 7 6 5.3293 -0.8962 -0.0023 8 7 6.4134 -0.1606 -0.0025 9 8 7.3972 -0.8700 0.0022 10 6 7.0351 -2.1568 -0.0043 11 6 7.9604 -3.3462 -0.0057 12 6 8.2678 -3.7418 -1.4270 13 1 7.8366 -3.1871 -2.2473 14 6 9.0996 -4.8119 -1.6803 15 7 9.6290 -5.4840 -0.6815 16 14 9.4812 -5.3018 -3.4420 17 1 8.7717 -4.3892 -4.3743 18 1 10.9448 -5.2089 -3.6757 19 1 9.0300 -6.6970 -3.6767 20 7 5.7262 -2.1905 -0.0034 21 16 2.4831 -1.4035 -0.0006 22 1 -0.3634 -0.0007 1.0276 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3633 -0.8896 -0.5145 25 1 4.7605 2.3181 -1.0132 26 1 4.0809 2.8867 0.5305 27 1 5.4363 1.7329 0.5260 28 1 7.4814 -4.1799 0.5079 29 1 8.8863 -3.0869 0.5076 30 1 10.2139 -6.2371 -0.8597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259700434.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:44 Heat of formation + Delta-G solvation = 78.630590 kcal Electronic energy + Delta-G solvation = -16831.885933 eV Core-core repulsion = 13949.282843 eV Total energy + Delta-G solvation = -2882.603090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.47340 -41.11628 -37.06146 -35.92771 -34.54430 -33.27528 -30.62160 -30.02129 -29.32767 -26.03796 -24.86074 -23.92546 -23.25199 -20.38845 -19.34361 -18.84011 -18.39150 -18.09399 -16.85250 -16.57882 -16.37198 -15.19680 -15.01300 -14.49721 -14.45869 -14.31006 -14.18817 -13.56114 -13.39047 -13.26954 -13.09975 -12.92789 -12.76269 -12.66771 -12.52965 -12.19450 -11.98173 -11.92535 -11.12142 -10.86379 -10.68455 -10.30580 -9.68495 -8.32394 -6.45640 -0.89795 0.01628 0.25316 0.54368 1.15136 1.42430 1.44382 1.56011 1.72360 1.90101 2.37364 2.45221 2.96998 3.00707 3.09417 3.85060 3.99055 4.10315 4.49914 4.57038 4.59443 4.65902 4.67367 4.77446 4.85349 5.07155 5.07510 5.16500 5.25557 5.57596 5.85493 6.47851 6.58731 7.08760 7.23397 8.78661 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030505 B = 0.004514 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.676439 B = 6201.428405 C = 6628.296716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.061 3.939 3 N -0.494 5.494 4 C 0.118 3.882 5 C -0.083 4.083 6 C -0.219 4.219 7 C 0.238 3.762 8 N -0.389 5.389 9 O 0.061 5.939 10 C 0.243 3.757 11 C 0.109 3.891 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.024 3.976 15 N -0.914 5.914 16 Si 0.970 3.030 17 H -0.273 1.273 18 H -0.270 1.270 19 H -0.273 1.273 20 N -0.515 5.515 21 S 0.212 5.788 22 H 0.111 0.889 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 9.458 1.621 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.215 4.215 3 N -0.210 5.210 4 C -0.021 4.021 5 C -0.142 4.142 6 C -0.342 4.342 7 C -0.033 4.033 8 N -0.103 5.103 9 O 0.007 5.993 10 C 0.024 3.976 11 C 0.070 3.930 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.552 5.552 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.198 1.198 20 N -0.250 5.250 21 S 0.469 5.531 22 H 0.129 0.871 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.580 9.349 1.680 19.108 hybrid contribution 1.397 0.112 -0.694 1.564 sum -15.183 9.461 0.986 17.916 Atomic orbital electron populations 1.20788 0.81068 1.06119 1.05955 1.28205 1.03880 0.90731 0.98665 1.66244 1.03367 1.32277 1.19061 1.20813 0.91158 0.93266 0.96856 1.20557 0.95701 0.94053 1.03878 1.22658 0.92819 0.97304 1.21389 1.22759 0.93573 0.85769 1.01222 1.74865 0.93846 1.18002 1.23635 1.85247 1.30573 1.17030 1.66463 1.29685 0.91009 0.87524 0.89369 1.17990 0.91419 0.84301 0.99263 1.21026 1.30696 1.15842 0.90735 0.92948 1.25702 0.94616 0.95320 1.02041 1.70005 1.31751 1.20564 1.32891 0.85325 0.78366 0.78235 0.78693 1.19709 1.19542 1.19823 1.72122 1.09641 1.19105 1.24111 1.84055 0.93175 1.09598 1.66242 0.87079 0.87909 0.87504 0.89723 0.88551 0.90525 0.92395 0.92333 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.46 71.24 0.75 -0.15 16 2 C 0.06 1.36 7.38 88.50 0.65 2.01 16 3 N -0.49 -13.51 10.51 -178.58 -1.88 -15.39 16 4 C 0.12 3.65 6.78 41.91 0.28 3.93 16 5 C -0.08 -2.25 9.81 71.24 0.70 -1.55 16 6 C -0.22 -7.60 6.52 24.07 0.16 -7.45 16 7 C 0.24 9.78 7.95 136.98 1.09 10.86 16 8 N -0.39 -16.00 9.85 -58.81 -0.58 -16.58 16 9 O 0.06 2.64 11.29 74.48 0.84 3.48 16 10 C 0.24 11.16 7.68 88.35 0.68 11.83 16 11 C 0.11 5.41 5.60 29.10 0.16 5.57 16 12 C -0.54 -29.35 9.09 25.60 0.23 -29.11 16 13 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 14 C 0.02 1.29 5.46 84.66 0.46 1.75 16 15 N -0.91 -50.28 13.29 21.45 0.28 -50.00 16 16 Si 0.97 41.93 29.54 68.60 2.03 43.95 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 N -0.52 -23.29 11.58 -302.30 -3.50 -26.79 16 21 S 0.21 5.70 23.17 -56.49 -1.31 4.39 16 22 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 2.30 6.12 -2.39 -0.01 2.28 16 28 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 29 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -62.61 286.43 2.23 -60.39 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: 1.18 Total: -1.17 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.16 Total: -2.29 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -5.67 Total: -108.75 kcal Atomic # 8 Polarization: 2.64 SS G_CDS: 0.84 Total: 3.48 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.31 Total: 4.39 kcal Total: -62.61 2.23 -60.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700434.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.018 kcal (2) G-P(sol) polarization free energy of solvation -62.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds