Wall clock time and date at job start Mon Mar 30 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36814 * 125.06751 * 2 1 4 4 C 1.34243 * 109.92385 * 180.20518 * 3 2 1 5 5 C 1.50700 * 126.49559 * 179.83644 * 4 3 2 6 6 H 1.09004 * 109.47210 * 144.68992 * 5 4 3 7 7 O 1.42903 * 109.47593 * 24.68690 * 5 4 3 8 8 C 1.50702 * 109.46869 * 264.68699 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 5 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 5 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.46479 * 107.00185 * 359.57392 * 4 3 2 17 17 C 1.39665 * 134.02006 * 180.29927 * 16 4 3 18 18 C 1.36613 * 119.78994 * 179.97438 * 17 16 4 19 19 C 1.38829 * 120.53785 * 0.02562 * 18 17 16 20 20 C 1.37851 * 120.64911 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.12097 * 180.02562 * 20 19 18 22 22 C 1.37721 * 125.06422 * 179.72687 * 2 1 3 23 23 H 1.09000 * 109.47099 * 270.27373 * 1 2 3 24 24 H 1.09004 * 109.47065 * 30.27260 * 1 2 3 25 25 H 1.08999 * 109.47460 * 150.27178 * 1 2 3 26 26 H 1.08004 * 125.03666 * 0.06189 * 3 2 1 27 27 H 0.96697 * 113.99557 * 300.00823 * 7 5 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.08005 * 120.10432 * 359.97438 * 17 16 4 30 30 H 1.07998 * 119.73337 * 180.02562 * 18 17 16 31 31 H 1.07998 * 119.67734 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1198 0.0000 4 6 3.5469 0.7691 -0.0045 5 6 4.7285 1.7044 -0.0095 6 1 5.5361 1.2727 0.5818 7 8 4.3445 2.9603 0.5537 8 6 5.1988 1.9119 -1.4262 9 1 4.6924 1.4165 -2.2414 10 6 6.2717 2.7393 -1.6821 11 7 6.8881 3.3428 -0.6895 12 14 6.8498 3.0026 -3.4388 13 1 5.7457 3.5885 -4.2407 14 1 8.0112 3.9280 -3.4442 15 1 7.2524 1.7003 -4.0280 16 6 3.5944 -0.6949 0.0027 17 6 4.6297 -1.6323 0.0077 18 6 4.3370 -2.9667 0.0148 19 6 3.0179 -3.3996 0.0165 20 6 1.9805 -2.4919 0.0116 21 17 0.3361 -3.0483 0.0145 22 6 2.2562 -1.1272 0.0054 23 1 -0.3633 0.0049 1.0277 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3634 -0.8924 -0.5096 26 1 1.8835 2.1354 0.0010 27 1 3.6285 3.4024 0.0773 28 1 7.6432 3.9246 -0.8695 29 1 5.6584 -1.3033 0.0061 30 1 5.1383 -3.6908 0.0191 31 1 2.8024 -4.4578 0.0216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:37 Heat of formation + Delta-G solvation = -15.001523 kcal Electronic energy + Delta-G solvation = -17530.971052 eV Core-core repulsion = 14609.971312 eV Total energy + Delta-G solvation = -2920.999740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.26785 -38.38313 -37.51051 -37.34324 -34.24726 -33.54666 -31.14271 -30.06199 -29.17915 -26.83198 -24.46678 -23.54927 -22.50739 -20.47313 -19.03820 -18.03475 -17.46214 -16.69492 -16.52339 -16.31120 -16.05160 -15.48249 -15.17770 -14.74631 -14.60897 -14.10503 -13.75609 -13.43574 -13.32513 -13.13677 -12.83440 -12.76338 -12.64273 -12.19745 -12.11453 -11.93068 -11.56464 -11.24528 -10.74208 -10.39422 -10.13024 -9.15111 -8.43576 -8.03595 -6.34926 0.04452 0.61599 1.10367 1.41218 1.42895 1.51088 1.78956 1.92466 2.42893 2.86996 3.14119 3.72825 3.90014 3.98985 4.08861 4.30420 4.42328 4.46774 4.47884 4.66521 4.67866 4.88632 4.92694 4.97195 5.31544 5.59026 5.61195 5.69529 5.81168 5.95458 6.11755 6.22492 6.42876 6.75090 7.35163 7.56105 8.93523 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.005910 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.472768 B = 4736.226590 C = 5168.579974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.482 5.482 3 C 0.044 3.956 4 C -0.186 4.186 5 C 0.300 3.700 6 H 0.023 0.977 7 O -0.575 6.575 8 C -0.565 4.565 9 H 0.049 0.951 10 C 0.030 3.970 11 N -0.899 5.899 12 Si 0.956 3.044 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.120 4.120 17 C -0.076 4.076 18 C -0.139 4.139 19 C -0.087 4.087 20 C -0.057 4.057 21 Cl -0.066 7.066 22 C 0.087 3.913 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.188 0.812 27 H 0.358 0.642 28 H 0.262 0.738 29 H 0.116 0.884 30 H 0.160 0.840 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.808 -11.396 0.503 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.165 5.165 3 C -0.080 4.080 4 C -0.192 4.192 5 C 0.242 3.758 6 H 0.041 0.959 7 O -0.379 6.379 8 C -0.603 4.603 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.536 5.536 12 Si 0.780 3.220 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.125 4.125 17 C -0.095 4.095 18 C -0.159 4.159 19 C -0.107 4.107 20 C -0.086 4.086 21 Cl -0.037 7.037 22 C -0.021 4.021 23 H 0.097 0.903 24 H 0.120 0.880 25 H 0.107 0.893 26 H 0.205 0.795 27 H 0.203 0.797 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.177 0.823 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.730 -11.425 0.995 17.135 hybrid contribution 0.095 0.598 -1.150 1.300 sum -12.635 -10.827 -0.155 16.640 Atomic orbital electron populations 1.22382 0.74990 1.05672 1.04111 1.43874 1.06916 1.03038 1.62692 1.21670 0.89365 0.91852 1.05115 1.21620 0.96053 0.92785 1.08762 1.17392 0.87439 0.79031 0.91983 0.95905 1.86534 1.57677 1.36600 1.57087 1.21761 1.15691 1.29411 0.93411 0.93317 1.25834 0.95815 0.94774 1.00827 1.70194 1.21141 1.29391 1.32891 0.85678 0.77952 0.78112 0.80226 1.19319 1.20688 1.19728 1.19350 0.92521 0.93482 1.07182 1.20637 0.98246 0.93193 0.97388 1.20834 0.96828 0.94709 1.03489 1.21057 0.90520 0.99803 0.99270 1.19915 0.86538 0.89331 1.12826 1.98302 1.18967 1.89101 1.97332 1.18063 0.90399 0.87807 1.05847 0.90291 0.88011 0.89276 0.79490 0.79706 0.92864 0.86618 0.82276 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 10.49 127.77 1.34 2.83 16 2 N -0.48 -15.47 3.18 -539.19 -1.71 -17.18 16 3 C 0.04 1.60 10.62 83.00 0.88 2.48 16 4 C -0.19 -8.29 5.39 -18.63 -0.10 -8.39 16 5 C 0.30 15.89 3.35 29.10 0.10 15.99 16 6 H 0.02 1.39 8.14 -2.38 -0.02 1.37 16 7 O -0.57 -29.93 12.51 -148.98 -1.86 -31.80 16 8 C -0.56 -31.63 8.75 25.60 0.22 -31.40 16 9 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 10 C 0.03 1.68 5.40 84.66 0.46 2.13 16 11 N -0.90 -53.68 12.83 21.45 0.28 -53.41 16 12 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 C -0.12 -4.94 6.35 -20.20 -0.13 -5.07 16 17 C -0.08 -2.82 10.05 22.23 0.22 -2.60 16 18 C -0.14 -3.93 9.97 22.03 0.22 -3.71 16 19 C -0.09 -2.25 9.80 22.32 0.22 -2.03 16 20 C -0.06 -1.66 6.33 22.41 0.14 -1.52 16 21 Cl -0.07 -1.52 26.06 -2.72 -0.07 -1.60 16 22 C 0.09 3.07 6.78 39.04 0.26 3.34 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.09 1.84 5.72 -2.39 -0.01 1.82 16 26 H 0.19 5.70 7.39 -2.91 -0.02 5.68 16 27 H 0.36 15.84 8.09 -74.06 -0.60 15.24 16 28 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 29 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -68.85 284.56 3.06 -65.80 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.56 Total: 20.39 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.84 Total: -27.96 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -1.44 Total: -70.59 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.86 Total: -31.80 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.60 kcal Total: -68.85 3.06 -65.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.796 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds