Wall clock time and date at job start Mon Mar 30 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36808 * 125.06764 * 2 1 4 4 C 1.34240 * 109.92683 * 179.81870 * 3 2 1 5 5 C 1.50703 * 126.50432 * 180.17116 * 4 3 2 6 6 H 1.09000 * 109.47059 * 215.31327 * 5 4 3 7 7 O 1.42901 * 109.46499 * 335.31197 * 5 4 3 8 8 C 1.50697 * 109.47467 * 95.31142 * 5 4 3 9 9 H 1.08006 * 119.99672 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00196 * 180.02562 * 8 5 4 11 11 N 1.31512 * 119.99737 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 120.00031 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.46717 * 90.00249 * 12 10 8 14 14 H 1.48499 * 109.47147 * 210.00118 * 12 10 8 15 15 H 1.48497 * 109.47104 * 330.00171 * 12 10 8 16 16 C 1.46492 * 106.99924 * 0.43198 * 4 3 2 17 17 C 1.39672 * 134.01490 * 179.73584 * 16 4 3 18 18 C 1.36614 * 119.78228 * 179.97438 * 17 16 4 19 19 C 1.38834 * 120.53872 * 0.02562 * 18 17 16 20 20 C 1.37848 * 120.64941 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 120.12078 * 179.97438 * 20 19 18 22 22 C 1.37725 * 125.06364 * 180.30948 * 2 1 3 23 23 H 1.08999 * 109.46892 * 269.69795 * 1 2 3 24 24 H 1.09000 * 109.46803 * 29.68968 * 1 2 3 25 25 H 1.09000 * 109.47214 * 149.69762 * 1 2 3 26 26 H 1.08005 * 125.03830 * 0.02562 * 3 2 1 27 27 H 0.96693 * 114.00024 * 60.00589 * 7 5 4 28 28 H 0.97000 * 119.99861 * 180.02562 * 11 10 8 29 29 H 1.07993 * 120.10898 * 0.02755 * 17 16 4 30 30 H 1.08000 * 119.72861 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.67287 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5469 0.7691 0.0040 5 6 4.7286 1.7043 0.0090 6 1 5.5359 1.2728 -0.5828 7 8 4.3443 2.9603 -0.5537 8 6 5.1995 1.9114 1.4254 9 1 4.6937 1.4151 2.2406 10 6 6.2758 2.7344 1.6808 11 7 6.8912 3.3391 0.6883 12 14 6.8589 2.9917 3.4367 13 1 7.8794 1.9671 3.7745 14 1 7.4548 4.3456 3.5671 15 1 5.7061 2.8669 4.3644 16 6 3.5944 -0.6950 -0.0038 17 6 4.6298 -1.6324 -0.0088 18 6 4.3371 -2.9668 -0.0154 19 6 3.0180 -3.3996 -0.0176 20 6 1.9805 -2.4919 -0.0127 21 17 0.3361 -3.0483 -0.0163 22 6 2.2563 -1.1273 -0.0061 23 1 -0.3633 -0.0054 1.0277 24 1 -0.3633 0.8928 -0.5090 25 1 -0.3633 -0.8872 -0.5185 26 1 1.8836 2.1353 0.0004 27 1 3.6287 3.4024 -0.0769 28 1 7.6486 3.9179 0.8679 29 1 5.6584 -1.3034 -0.0067 30 1 5.1384 -3.6909 -0.0188 31 1 2.8025 -4.4579 -0.0224 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:38 Heat of formation + Delta-G solvation = -15.093572 kcal Electronic energy + Delta-G solvation = -17530.965208 eV Core-core repulsion = 14609.961476 eV Total energy + Delta-G solvation = -2921.003732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.26740 -38.38280 -37.51067 -37.34291 -34.25125 -33.54571 -31.14304 -30.06187 -29.18081 -26.83373 -24.46791 -23.54912 -22.50716 -20.47376 -19.04159 -18.03539 -17.46153 -16.69711 -16.53430 -16.30336 -16.05151 -15.47419 -15.17912 -14.75438 -14.61300 -14.10508 -13.73598 -13.44563 -13.35969 -13.10586 -12.84572 -12.77095 -12.64320 -12.19949 -12.09844 -11.94222 -11.55904 -11.24235 -10.74534 -10.39898 -10.12762 -9.15133 -8.43687 -8.03886 -6.35208 0.04477 0.61616 1.10318 1.40984 1.41359 1.52146 1.78938 1.92548 2.42600 2.86974 3.13844 3.72811 3.90093 3.99048 4.08941 4.30426 4.42086 4.46951 4.47784 4.66494 4.67869 4.88632 4.92721 4.97187 5.31558 5.59022 5.61213 5.69529 5.81196 5.95471 6.11634 6.22514 6.42883 6.75088 7.35103 7.56070 8.93354 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.005913 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.894497 B = 4734.408174 C = 5168.546474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.482 5.482 3 C 0.044 3.956 4 C -0.186 4.186 5 C 0.299 3.701 6 H 0.023 0.977 7 O -0.575 6.575 8 C -0.564 4.564 9 H 0.048 0.952 10 C 0.030 3.970 11 N -0.899 5.899 12 Si 0.956 3.044 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.269 1.269 16 C -0.120 4.120 17 C -0.076 4.076 18 C -0.139 4.139 19 C -0.087 4.087 20 C -0.057 4.057 21 Cl -0.066 7.066 22 C 0.087 3.913 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.188 0.812 27 H 0.358 0.642 28 H 0.262 0.738 29 H 0.116 0.884 30 H 0.160 0.840 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.783 -11.412 -0.697 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.165 5.165 3 C -0.080 4.080 4 C -0.192 4.192 5 C 0.241 3.759 6 H 0.041 0.959 7 O -0.379 6.379 8 C -0.602 4.602 9 H 0.066 0.934 10 C -0.173 4.173 11 N -0.536 5.536 12 Si 0.781 3.219 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.193 1.193 16 C -0.125 4.125 17 C -0.095 4.095 18 C -0.159 4.159 19 C -0.107 4.107 20 C -0.086 4.086 21 Cl -0.037 7.037 22 C -0.021 4.021 23 H 0.095 0.905 24 H 0.121 0.879 25 H 0.108 0.892 26 H 0.205 0.795 27 H 0.203 0.797 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.177 0.823 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.710 -11.441 -1.186 17.142 hybrid contribution 0.106 0.594 1.194 1.337 sum -12.604 -10.847 0.008 16.629 Atomic orbital electron populations 1.22383 0.74990 1.05747 1.04030 1.43874 1.06915 1.03040 1.62693 1.21670 0.89370 0.91855 1.05108 1.21624 0.96055 0.92788 1.08768 1.17395 0.87444 0.79035 0.91985 0.95885 1.86532 1.57711 1.36585 1.57062 1.21784 1.15488 1.29465 0.93427 0.93361 1.25831 0.95858 0.94762 1.00811 1.70197 1.21039 1.29549 1.32846 0.85618 0.78579 0.77533 0.80206 1.19957 1.20550 1.19318 1.19354 0.92522 0.93481 1.07178 1.20637 0.98244 0.93189 0.97390 1.20836 0.96824 0.94711 1.03481 1.21059 0.90522 0.99802 0.99269 1.19916 0.86534 0.89330 1.12824 1.98303 1.18976 1.89102 1.97335 1.18063 0.90404 0.87809 1.05852 0.90533 0.87869 0.89186 0.79484 0.79698 0.92862 0.86605 0.82268 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 10.49 127.77 1.34 2.83 16 2 N -0.48 -15.48 3.18 -539.20 -1.71 -17.19 16 3 C 0.04 1.60 10.62 83.00 0.88 2.48 16 4 C -0.19 -8.30 5.39 -18.62 -0.10 -8.40 16 5 C 0.30 15.88 3.35 29.10 0.10 15.98 16 6 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 7 O -0.57 -29.90 12.52 -148.98 -1.86 -31.77 16 8 C -0.56 -31.59 8.75 25.60 0.22 -31.36 16 9 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 10 C 0.03 1.67 5.40 84.66 0.46 2.12 16 11 N -0.90 -53.67 12.84 21.45 0.28 -53.39 16 12 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 C -0.12 -4.94 6.35 -20.20 -0.13 -5.07 16 17 C -0.08 -2.82 10.05 22.24 0.22 -2.59 16 18 C -0.14 -3.92 9.97 22.03 0.22 -3.70 16 19 C -0.09 -2.25 9.80 22.32 0.22 -2.03 16 20 C -0.06 -1.66 6.33 22.41 0.14 -1.52 16 21 Cl -0.07 -1.53 26.06 -2.72 -0.07 -1.60 16 22 C 0.09 3.07 6.78 39.04 0.26 3.34 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.10 1.74 8.13 -2.39 -0.02 1.72 16 25 H 0.09 1.83 5.72 -2.39 -0.01 1.82 16 26 H 0.19 5.70 7.40 -2.91 -0.02 5.68 16 27 H 0.36 15.83 8.09 -74.06 -0.60 15.23 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 30 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -68.94 284.57 3.06 -65.88 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.56 Total: 20.18 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.84 Total: -27.93 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -1.44 Total: -70.59 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.86 Total: -31.77 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -68.94 3.06 -65.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.788 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds