Wall clock time and date at job start Mon Mar 30 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33817 * 124.52496 * 2 1 4 4 C 1.37476 * 115.10308 * 179.97438 * 3 2 1 5 5 C 1.36651 * 113.29714 * 0.23400 * 4 3 2 6 6 C 1.46579 * 125.45951 * 179.74507 * 5 4 3 7 7 O 1.21699 * 120.00139 * 353.39560 * 6 5 4 8 8 N 1.34776 * 119.99757 * 173.39246 * 6 5 4 9 9 C 1.47417 * 125.65157 * 3.72597 * 8 6 5 10 10 C 1.54910 * 104.83392 * 204.08872 * 9 8 6 11 11 C 1.55157 * 101.58190 * 322.99006 * 10 9 8 12 12 C 1.47025 * 125.64414 * 183.41603 * 8 6 5 13 13 H 1.08996 * 109.88516 * 59.56112 * 12 8 6 14 14 C 1.50700 * 109.88169 * 298.39476 * 12 8 6 15 15 H 1.07999 * 120.00384 * 274.93653 * 14 12 8 16 16 C 1.37880 * 120.00059 * 94.93846 * 14 12 8 17 17 N 1.31512 * 119.99665 * 7.39874 * 16 14 12 18 18 Si 1.86796 * 120.00229 * 187.39641 * 16 14 12 19 19 H 1.48504 * 109.47034 * 89.99889 * 18 16 14 20 20 H 1.48492 * 109.47447 * 209.99982 * 18 16 14 21 21 H 1.48497 * 109.47187 * 330.00344 * 18 16 14 22 22 S 1.70622 * 124.52214 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47232 * 89.99147 * 1 2 3 24 24 H 1.09001 * 109.47032 * 209.99814 * 1 2 3 25 25 H 1.09006 * 109.46412 * 329.99376 * 1 2 3 26 26 H 1.07998 * 122.44963 * 359.96077 * 3 2 1 27 27 H 1.07996 * 123.35102 * 179.97438 * 4 3 2 28 28 H 1.08999 * 110.37012 * 322.92997 * 9 8 6 29 29 H 1.09007 * 110.36792 * 85.25128 * 9 8 6 30 30 H 1.09004 * 111.00182 * 81.06463 * 10 9 8 31 31 H 1.09000 * 111.00482 * 204.91614 * 10 9 8 32 32 H 1.08996 * 110.71969 * 153.86081 * 11 10 9 33 33 H 1.08992 * 110.72071 * 276.96223 * 11 10 9 34 34 H 0.97003 * 119.99898 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0006 5 6 3.9493 -0.4492 -0.0041 6 6 5.3123 -0.9884 -0.0100 7 8 6.2629 -0.2384 -0.1324 8 7 5.5128 -2.3148 0.1200 9 6 4.4563 -3.3399 0.1978 10 6 5.1137 -4.5316 0.9377 11 6 6.5581 -4.4906 0.3726 12 6 6.8217 -2.9796 0.2014 13 1 7.3763 -2.6022 1.0605 14 6 7.6014 -2.7328 -1.0644 15 1 7.4524 -3.3702 -1.9234 16 6 8.5051 -1.6933 -1.1258 17 7 8.7947 -1.0088 -0.0408 18 14 9.3182 -1.2572 -2.7500 19 1 8.4906 -0.2516 -3.4636 20 1 10.6681 -0.6946 -2.4925 21 1 9.4421 -2.4788 -3.5852 22 16 2.4739 -1.4058 0.0006 23 1 -0.3633 0.0002 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5140 26 1 1.8430 2.0964 -0.0006 27 1 4.3550 1.6702 0.0002 28 1 3.6045 -2.9646 0.7649 29 1 4.1445 -3.6400 -0.8027 30 1 5.1112 -4.3714 2.0159 31 1 4.6208 -5.4698 0.6825 32 1 7.2616 -4.9293 1.0801 33 1 6.6108 -5.0016 -0.5887 34 1 9.4308 -0.2777 -0.0839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259716817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:28 Heat of formation + Delta-G solvation = 3.221448 kcal Electronic energy + Delta-G solvation = -18133.028125 eV Core-core repulsion = 15350.695392 eV Total energy + Delta-G solvation = -2782.332732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.87407 -37.59842 -35.91788 -32.60729 -31.72376 -30.55059 -28.55699 -26.68718 -24.52708 -23.37653 -22.13825 -20.80448 -19.29343 -17.83206 -17.24329 -16.36516 -15.47124 -15.26978 -14.62031 -14.28817 -14.05084 -13.59495 -13.30651 -12.90053 -12.50617 -12.48182 -12.10544 -12.03680 -11.82086 -11.59427 -11.39029 -11.23366 -10.95840 -10.79543 -10.46551 -10.15915 -9.97909 -9.47710 -9.15047 -8.84445 -8.23777 -8.20597 -8.12437 -7.24092 -5.89147 -3.98260 1.00189 1.87522 2.29046 2.85849 3.39046 3.46679 3.47895 4.13784 4.33990 4.54900 4.95541 5.21088 5.24367 5.33106 5.46152 5.55628 5.61191 5.63331 5.76651 5.79415 5.97885 6.04838 6.20026 6.27336 6.33947 6.54675 6.63392 6.74131 6.75029 6.86634 7.64946 7.86568 7.97179 8.37372 8.79265 9.12616 9.50793 9.70349 11.16045 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.007267 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.158115 B = 3852.358937 C = 4686.786273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.244 4.244 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.228 4.228 6 C 0.575 3.425 7 O -0.480 6.480 8 N -0.600 5.600 9 C 0.089 3.911 10 C -0.131 4.131 11 C -0.119 4.119 12 C 0.248 3.752 13 H 0.065 0.935 14 C -0.541 4.541 15 H 0.052 0.948 16 C 0.096 3.904 17 N -0.839 5.839 18 Si 0.885 3.115 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.276 1.276 22 S 0.195 5.805 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.147 0.853 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 -2.158 2.104 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.362 4.362 3 C -0.180 4.180 4 C -0.115 4.115 5 C -0.349 4.349 6 C 0.360 3.640 7 O -0.354 6.354 8 N -0.336 5.336 9 C -0.037 4.037 10 C -0.169 4.169 11 C -0.158 4.158 12 C 0.151 3.849 13 H 0.083 0.917 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.113 4.113 17 N -0.471 5.471 18 Si 0.712 3.288 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.201 1.201 22 S 0.463 5.537 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.165 0.835 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.508 -3.031 2.140 14.975 hybrid contribution 0.433 2.041 -0.991 2.310 sum -14.076 -0.990 1.148 14.157 Atomic orbital electron populations 1.20268 0.88352 1.02652 1.02327 1.24578 1.01372 1.00147 1.10081 1.19850 0.92797 0.98974 1.06356 1.20663 0.95834 0.95541 0.99422 1.25387 0.97606 0.97560 1.14337 1.16530 0.85629 0.82192 0.79663 1.90951 1.40510 1.56660 1.47300 1.49751 1.09054 1.03746 1.71063 1.22306 0.91211 0.90667 0.99471 1.22718 0.97991 0.96617 0.99613 1.22703 0.93831 0.99121 1.00132 1.19431 0.80203 0.86221 0.99025 0.91724 1.21077 1.22484 1.15575 0.98800 0.92956 1.24885 0.95513 0.95267 0.95654 1.69852 1.30924 1.19057 1.27308 0.86740 0.78471 0.78658 0.84881 1.20649 1.21310 1.20083 1.83319 0.94754 1.06721 1.68937 0.91105 0.91629 0.91138 0.85001 0.83487 0.92352 0.92144 0.91482 0.91313 0.91796 0.91633 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.31 36.00 0.37 -0.39 16 2 C -0.24 -3.35 6.28 -35.86 -0.23 -3.57 16 3 C -0.15 -2.21 9.99 -41.41 -0.41 -2.62 16 4 C -0.08 -1.50 10.02 -40.43 -0.41 -1.90 16 5 C -0.23 -4.55 6.37 -36.79 -0.23 -4.78 16 6 C 0.58 14.18 7.62 -12.90 -0.10 14.09 16 7 O -0.48 -13.94 14.16 5.19 0.07 -13.87 16 8 N -0.60 -13.91 3.06 -165.88 -0.51 -14.41 16 9 C 0.09 1.59 5.61 -2.53 -0.01 1.57 16 10 C -0.13 -2.09 7.09 -24.58 -0.17 -2.26 16 11 C -0.12 -2.34 6.47 -24.89 -0.16 -2.50 16 12 C 0.25 6.23 3.01 -68.10 -0.21 6.02 16 13 H 0.06 1.84 7.29 -51.93 -0.38 1.46 16 14 C -0.54 -15.19 8.12 -34.44 -0.28 -15.47 16 15 H 0.05 1.46 7.67 -52.49 -0.40 1.06 16 16 C 0.10 2.80 4.42 -17.82 -0.08 2.72 16 17 N -0.84 -25.39 11.24 55.43 0.62 -24.76 16 18 Si 0.88 22.57 29.54 -169.99 -5.02 17.55 16 19 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 S 0.20 2.96 18.50 -107.50 -1.99 0.98 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.15 2.69 8.06 -52.49 -0.42 2.26 16 28 H 0.06 0.93 4.90 -28.00 -0.14 0.80 16 29 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.28 7.74 -51.93 -0.40 0.87 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -32.85 292.15 -8.60 -41.45 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.26 Total: -2.23 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.92 Total: -9.10 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.12 Total: -39.18 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.99 Total: 0.98 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.85 -8.60 -41.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.670 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds