Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33817 * 124.52496 * 2 1 4 4 C 1.37476 * 115.10308 * 179.97438 * 3 2 1 5 5 C 1.36651 * 113.29714 * 0.23400 * 4 3 2 6 6 C 1.46579 * 125.45951 * 179.74507 * 5 4 3 7 7 O 1.21699 * 120.00139 * 353.39560 * 6 5 4 8 8 N 1.34776 * 119.99757 * 173.39246 * 6 5 4 9 9 C 1.47417 * 125.65157 * 3.72597 * 8 6 5 10 10 C 1.54910 * 104.83392 * 204.08872 * 9 8 6 11 11 C 1.55157 * 101.58190 * 322.99006 * 10 9 8 12 12 C 1.47025 * 125.64414 * 183.41603 * 8 6 5 13 13 H 1.08996 * 109.88516 * 59.56112 * 12 8 6 14 14 C 1.50700 * 109.88169 * 298.39476 * 12 8 6 15 15 H 1.07999 * 120.00384 * 274.93653 * 14 12 8 16 16 C 1.37880 * 120.00059 * 94.93846 * 14 12 8 17 17 N 1.31512 * 119.99665 * 7.39874 * 16 14 12 18 18 Si 1.86796 * 120.00229 * 187.39641 * 16 14 12 19 19 H 1.48504 * 109.47034 * 89.99889 * 18 16 14 20 20 H 1.48492 * 109.47447 * 209.99982 * 18 16 14 21 21 H 1.48497 * 109.47187 * 330.00344 * 18 16 14 22 22 S 1.70622 * 124.52214 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47232 * 89.99147 * 1 2 3 24 24 H 1.09001 * 109.47032 * 209.99814 * 1 2 3 25 25 H 1.09006 * 109.46412 * 329.99376 * 1 2 3 26 26 H 1.07998 * 122.44963 * 359.96077 * 3 2 1 27 27 H 1.07996 * 123.35102 * 179.97438 * 4 3 2 28 28 H 1.08999 * 110.37012 * 322.92997 * 9 8 6 29 29 H 1.09007 * 110.36792 * 85.25128 * 9 8 6 30 30 H 1.09004 * 111.00182 * 81.06463 * 10 9 8 31 31 H 1.09000 * 111.00482 * 204.91614 * 10 9 8 32 32 H 1.08996 * 110.71969 * 153.86081 * 11 10 9 33 33 H 1.08992 * 110.72071 * 276.96223 * 11 10 9 34 34 H 0.97003 * 119.99898 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0006 5 6 3.9493 -0.4492 -0.0041 6 6 5.3123 -0.9884 -0.0100 7 8 6.2629 -0.2384 -0.1324 8 7 5.5128 -2.3148 0.1200 9 6 4.4563 -3.3399 0.1978 10 6 5.1137 -4.5316 0.9377 11 6 6.5581 -4.4906 0.3726 12 6 6.8217 -2.9796 0.2014 13 1 7.3763 -2.6022 1.0605 14 6 7.6014 -2.7328 -1.0644 15 1 7.4524 -3.3702 -1.9234 16 6 8.5051 -1.6933 -1.1258 17 7 8.7947 -1.0088 -0.0408 18 14 9.3182 -1.2572 -2.7500 19 1 8.4906 -0.2516 -3.4636 20 1 10.6681 -0.6946 -2.4925 21 1 9.4421 -2.4788 -3.5852 22 16 2.4739 -1.4058 0.0006 23 1 -0.3633 0.0002 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5140 26 1 1.8430 2.0964 -0.0006 27 1 4.3550 1.6702 0.0002 28 1 3.6045 -2.9646 0.7649 29 1 4.1445 -3.6400 -0.8027 30 1 5.1112 -4.3714 2.0159 31 1 4.6208 -5.4698 0.6825 32 1 7.2616 -4.9293 1.0801 33 1 6.6108 -5.0016 -0.5887 34 1 9.4308 -0.2777 -0.0839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259716817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = -18.119683 kcal Electronic energy + Delta-G solvation = -18133.953546 eV Core-core repulsion = 15350.695392 eV Total energy + Delta-G solvation = -2783.258153 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59855 -38.94225 -37.63324 -34.68284 -33.04231 -32.07504 -30.34325 -27.96653 -26.46663 -24.72702 -23.64940 -22.21767 -20.99572 -19.29361 -18.87305 -18.31214 -17.04629 -16.73747 -16.48372 -15.94271 -15.42540 -15.03223 -14.65642 -14.33845 -14.07633 -13.90596 -13.76919 -13.35438 -13.21933 -13.11796 -12.82336 -12.79879 -12.61177 -12.42639 -12.35281 -11.95407 -11.34794 -11.27521 -11.03844 -10.83933 -10.20477 -9.57953 -9.43442 -9.08616 -8.06506 -6.20948 -0.33884 0.58417 1.03472 1.30946 1.36316 1.42644 1.55314 2.38893 2.46739 2.58820 3.36493 3.83579 3.87866 3.95614 4.19135 4.32703 4.36141 4.47661 4.61839 4.73947 4.74397 4.79022 4.89166 5.09918 5.11741 5.14379 5.24404 5.30150 5.33252 5.51346 5.61508 5.77307 6.07004 6.28251 6.81018 7.14206 7.50272 7.70658 8.97179 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.007267 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.158115 B = 3852.358937 C = 4686.786273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.217 4.217 3 C -0.165 4.165 4 C -0.079 4.079 5 C -0.290 4.290 6 C 0.562 3.438 7 O -0.547 6.547 8 N -0.609 5.609 9 C 0.083 3.917 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.242 3.758 13 H 0.016 0.984 14 C -0.553 4.553 15 H 0.050 0.950 16 C 0.046 3.954 17 N -0.874 5.874 18 Si 0.938 3.062 19 H -0.294 1.294 20 H -0.280 1.280 21 H -0.257 1.257 22 S 0.251 5.749 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.791 -3.736 1.786 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.337 4.337 3 C -0.194 4.194 4 C -0.112 4.112 5 C -0.410 4.410 6 C 0.349 3.651 7 O -0.427 6.427 8 N -0.343 5.343 9 C -0.041 4.041 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.142 3.858 13 H 0.034 0.966 14 C -0.592 4.592 15 H 0.068 0.932 16 C -0.160 4.160 17 N -0.509 5.509 18 Si 0.764 3.236 19 H -0.221 1.221 20 H -0.206 1.206 21 H -0.181 1.181 22 S 0.519 5.481 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.179 0.821 27 H 0.146 0.854 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.495 -4.672 1.818 19.163 hybrid contribution 1.468 2.534 -0.862 3.053 sum -17.027 -2.138 0.956 17.188 Atomic orbital electron populations 1.20499 0.84755 1.04614 1.04053 1.25186 1.03552 0.98948 1.05967 1.19992 0.91053 1.00976 1.07386 1.20824 0.97451 0.94700 0.98247 1.24932 0.97607 0.99246 1.19241 1.17236 0.87161 0.82272 0.78430 1.90892 1.43266 1.58195 1.50301 1.49474 1.09945 1.04466 1.70387 1.22633 0.90641 0.89844 1.00976 1.22746 0.94975 0.97792 0.99780 1.22572 0.96978 0.94681 1.00997 1.19307 0.80909 0.89738 0.95809 0.96632 1.21420 1.22742 1.15247 0.99773 0.93206 1.25599 0.96559 0.95560 0.98270 1.70004 1.32070 1.19726 1.29115 0.85901 0.77549 0.78550 0.81612 1.22127 1.20583 1.18126 1.82802 0.91406 1.06071 1.67828 0.89273 0.89785 0.89143 0.82132 0.85392 0.90106 0.90911 0.90528 0.86680 0.90926 0.91307 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.31 71.24 0.73 -0.40 16 2 C -0.22 -5.11 6.28 24.68 0.15 -4.96 16 3 C -0.16 -4.49 9.99 21.08 0.21 -4.28 16 4 C -0.08 -2.88 10.02 21.72 0.22 -2.67 16 5 C -0.29 -11.71 6.37 24.08 0.15 -11.55 16 6 C 0.56 29.06 7.62 86.42 0.66 29.72 16 7 O -0.55 -34.25 14.16 -4.35 -0.06 -34.31 16 8 N -0.61 -28.83 3.06 -796.94 -2.43 -31.27 16 9 C 0.08 2.77 5.61 86.86 0.49 3.26 16 10 C -0.12 -3.29 7.09 31.99 0.23 -3.06 16 11 C -0.11 -4.36 6.47 31.79 0.21 -4.15 16 12 C 0.24 12.56 3.01 44.60 0.13 12.70 16 13 H 0.02 0.95 7.29 -2.39 -0.02 0.93 16 14 C -0.55 -32.26 8.12 25.60 0.21 -32.05 16 15 H 0.05 2.84 7.67 -2.91 -0.02 2.82 16 16 C 0.05 2.77 4.42 84.66 0.37 3.15 16 17 N -0.87 -56.49 11.24 21.45 0.24 -56.25 16 18 Si 0.94 48.24 29.54 68.60 2.03 50.27 16 19 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 20 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 22 S 0.25 6.87 18.50 -56.49 -1.04 5.83 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 27 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 28 H 0.08 2.33 4.90 -17.60 -0.09 2.25 16 29 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.07 2.57 7.74 -2.39 -0.02 2.56 16 34 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -79.08 292.15 3.52 -75.57 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.02 Total: 4.46 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 3.77 Total: -14.30 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.19 Total: -87.52 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.06 Total: -34.31 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -1.04 Total: 5.83 kcal Total: -79.08 3.52 -75.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.447 kcal (2) G-P(sol) polarization free energy of solvation -79.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds