Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47154 * 299.99839 * 3 2 1 6 6 H 1.48499 * 109.47102 * 60.00104 * 3 2 1 7 7 C 1.37876 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46874 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47510 * 304.99971 * 10 9 7 12 12 N 1.46901 * 109.47323 * 65.00235 * 10 9 7 13 13 C 1.50701 * 109.46700 * 184.99975 * 10 9 7 14 14 C 1.33981 * 124.92522 * 100.01946 * 13 10 9 15 15 C 1.46798 * 106.18857 * 179.97438 * 14 13 10 16 16 C 1.39410 * 134.34949 * 179.97438 * 15 14 13 17 17 C 1.36724 * 119.73372 * 180.02562 * 16 15 14 18 18 C 1.38850 * 120.40690 * 359.97281 * 17 16 15 19 19 Cl 1.73597 * 119.67364 * 180.02562 * 18 17 16 20 20 C 1.37957 * 120.65014 * 0.27120 * 18 17 16 21 21 C 1.38931 * 119.81152 * 359.50960 * 20 18 17 22 22 O 1.34465 * 124.92260 * 279.97392 * 13 10 9 23 23 H 0.96997 * 120.00136 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46845 * 59.99991 * 9 7 2 25 25 H 1.08999 * 109.46668 * 300.00208 * 9 7 2 26 26 H 1.00902 * 110.99926 * 59.99445 * 12 10 9 27 27 H 1.00898 * 111.00186 * 183.94715 * 12 10 9 28 28 H 1.08000 * 126.90659 * 359.95937 * 14 13 10 29 29 H 1.07997 * 120.13270 * 359.97438 * 16 15 14 30 30 H 1.08007 * 119.79651 * 180.02562 * 17 16 15 31 31 H 1.08008 * 120.09165 * 179.70211 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 1 2.9289 -3.5547 -0.8441 12 7 3.0095 -3.6543 1.2528 13 6 1.4960 -4.9635 -0.1257 14 6 1.3506 -5.6600 -1.2610 15 6 0.5584 -6.8463 -0.9148 16 6 0.0757 -7.9394 -1.6329 17 6 -0.6536 -8.9026 -0.9930 18 6 -0.9154 -8.7986 0.3666 19 17 -1.8430 -10.0330 1.1601 20 6 -0.4500 -7.7214 1.0921 21 6 0.2969 -6.7345 0.4610 22 8 0.8768 -5.5947 0.8875 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.3978 -3.7525 2.0493 27 1 3.7172 -4.3735 1.2496 28 1 1.7382 -5.4005 -2.2351 29 1 0.2764 -8.0245 -2.6907 30 1 -1.0277 -9.7501 -1.5483 31 1 -0.6631 -7.6472 2.1483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259718690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = 11.707927 kcal Electronic energy + Delta-G solvation = -16869.543931 eV Core-core repulsion = 13949.702399 eV Total energy + Delta-G solvation = -2919.841532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.38488 -38.29659 -36.48012 -35.56188 -32.66649 -32.26912 -30.59352 -29.05742 -28.20324 -24.61571 -23.16454 -22.22967 -21.31316 -20.13792 -17.55173 -16.79939 -16.51175 -15.97790 -15.71321 -15.22441 -14.41979 -14.33203 -14.18896 -13.53766 -13.31797 -13.09335 -12.73555 -12.30956 -12.06946 -11.47168 -11.46290 -11.27259 -11.02175 -10.96411 -10.64943 -10.46833 -10.05744 -9.52955 -9.19182 -8.71024 -8.39037 -8.25797 -7.93722 -5.98972 -3.99327 0.76045 1.19743 1.81261 2.47796 2.93237 3.33869 3.41484 3.46696 3.53307 4.41823 4.50356 4.66336 4.88340 4.97630 5.13467 5.25089 5.33586 5.40281 5.66599 5.71896 5.93097 5.94830 6.08277 6.20286 6.37932 6.50897 6.55505 7.22187 7.38299 7.55978 7.79584 7.97614 8.01308 8.38156 9.06574 9.63435 11.12793 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.040518 B = 0.003778 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.893310 B = 7408.951769 C = 7504.264075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.052 3.948 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.066 0.934 9 C 0.032 3.968 10 C 0.168 3.832 11 H 0.107 0.893 12 N -0.818 5.818 13 C 0.038 3.962 14 C -0.227 4.227 15 C -0.115 4.115 16 C -0.064 4.064 17 C -0.129 4.129 18 C -0.021 4.021 19 Cl -0.066 7.066 20 C -0.094 4.094 21 C 0.054 3.946 22 O -0.185 6.185 23 H 0.259 0.741 24 H 0.025 0.975 25 H 0.022 0.978 26 H 0.343 0.657 27 H 0.326 0.674 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -18.373 -1.027 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.537 4.537 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.056 3.944 11 H 0.124 0.876 12 N -0.344 5.344 13 C -0.012 4.012 14 C -0.247 4.247 15 C -0.116 4.116 16 C -0.082 4.082 17 C -0.148 4.148 18 C -0.048 4.048 19 Cl -0.037 7.037 20 C -0.113 4.113 21 C 0.006 3.994 22 O -0.086 6.086 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.157 0.843 27 H 0.138 0.862 28 H 0.177 0.823 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.174 -17.508 -0.868 17.530 hybrid contribution -0.239 -0.224 0.052 0.331 sum -0.413 -17.731 -0.816 17.755 Atomic orbital electron populations 1.69981 1.06086 1.26515 1.51383 1.25023 0.94827 0.99339 0.95611 0.86475 0.80157 0.83607 0.77373 1.19624 1.21257 1.21176 1.21096 0.93455 0.89639 1.49499 0.91597 1.19240 0.92894 0.90398 0.98023 1.20979 0.93940 0.85651 0.93872 0.87557 1.58716 1.17813 1.54020 1.03858 1.24873 0.94540 0.96429 0.85358 1.22255 1.07267 0.95258 0.99903 1.20111 1.01096 0.96908 0.93506 1.20187 0.96332 0.91779 0.99888 1.20567 1.01213 1.00620 0.92378 1.20298 0.99770 0.91815 0.92935 1.98364 1.72022 1.52836 1.80472 1.19575 0.99507 0.91546 1.00691 1.19328 0.98782 0.88363 0.92889 1.84003 1.57199 1.30043 1.37328 0.93117 0.95648 0.95992 0.84332 0.86233 0.82292 0.84676 0.84586 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.50 -13.58 8.84 -34.44 -0.30 -13.88 16 8 H 0.07 1.77 7.74 -52.49 -0.41 1.37 16 9 C 0.03 0.78 4.60 -27.89 -0.13 0.66 16 10 C 0.17 3.23 3.13 -68.87 -0.22 3.02 16 11 H 0.11 1.95 8.12 -51.93 -0.42 1.53 16 12 N -0.82 -14.56 8.93 -5.65 -0.05 -14.61 16 13 C 0.04 0.68 6.06 -35.80 -0.22 0.46 16 14 C -0.23 -3.63 10.99 -37.62 -0.41 -4.04 16 15 C -0.12 -1.75 6.40 -105.15 -0.67 -2.42 16 16 C -0.06 -0.77 10.05 -39.69 -0.40 -1.17 16 17 C -0.13 -1.44 9.75 -39.90 -0.39 -1.83 16 18 C -0.02 -0.26 6.31 -39.46 -0.25 -0.51 16 19 Cl -0.07 -0.69 28.93 -51.86 -1.50 -2.20 16 20 C -0.09 -1.28 9.84 -39.43 -0.39 -1.67 16 21 C 0.05 0.87 7.42 -38.48 -0.29 0.59 16 22 O -0.18 -3.30 10.40 3.85 0.04 -3.26 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.34 6.10 8.84 -39.29 -0.35 5.75 16 27 H 0.33 4.81 9.06 -39.29 -0.36 4.46 16 28 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -29.98 291.84 -8.36 -38.34 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.20 Total: 6.23 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.76 Total: -19.43 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.69 Total: -40.63 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.98 -8.36 -38.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259718690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.048 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds