Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47154 * 299.99839 * 3 2 1 6 6 H 1.48499 * 109.47102 * 60.00104 * 3 2 1 7 7 C 1.37876 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46874 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47510 * 304.99971 * 10 9 7 12 12 N 1.46901 * 109.47323 * 65.00235 * 10 9 7 13 13 C 1.50701 * 109.46700 * 184.99975 * 10 9 7 14 14 C 1.33981 * 124.92522 * 100.01946 * 13 10 9 15 15 C 1.46798 * 106.18857 * 179.97438 * 14 13 10 16 16 C 1.39410 * 134.34949 * 179.97438 * 15 14 13 17 17 C 1.36724 * 119.73372 * 180.02562 * 16 15 14 18 18 C 1.38850 * 120.40690 * 359.97281 * 17 16 15 19 19 Cl 1.73597 * 119.67364 * 180.02562 * 18 17 16 20 20 C 1.37957 * 120.65014 * 0.27120 * 18 17 16 21 21 C 1.38931 * 119.81152 * 359.50960 * 20 18 17 22 22 O 1.34465 * 124.92260 * 279.97392 * 13 10 9 23 23 H 0.96997 * 120.00136 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46845 * 59.99991 * 9 7 2 25 25 H 1.08999 * 109.46668 * 300.00208 * 9 7 2 26 26 H 1.00902 * 110.99926 * 59.99445 * 12 10 9 27 27 H 1.00898 * 111.00186 * 183.94715 * 12 10 9 28 28 H 1.08000 * 126.90659 * 359.95937 * 14 13 10 29 29 H 1.07997 * 120.13270 * 359.97438 * 16 15 14 30 30 H 1.08007 * 119.79651 * 180.02562 * 17 16 15 31 31 H 1.08008 * 120.09165 * 179.70211 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 1 2.9289 -3.5547 -0.8441 12 7 3.0095 -3.6543 1.2528 13 6 1.4960 -4.9635 -0.1257 14 6 1.3506 -5.6600 -1.2610 15 6 0.5584 -6.8463 -0.9148 16 6 0.0757 -7.9394 -1.6329 17 6 -0.6536 -8.9026 -0.9930 18 6 -0.9154 -8.7986 0.3666 19 17 -1.8430 -10.0330 1.1601 20 6 -0.4500 -7.7214 1.0921 21 6 0.2969 -6.7345 0.4610 22 8 0.8768 -5.5947 0.8875 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.3978 -3.7525 2.0493 27 1 3.7172 -4.3735 1.2496 28 1 1.7382 -5.4005 -2.2351 29 1 0.2764 -8.0245 -2.6907 30 1 -1.0277 -9.7501 -1.5483 31 1 -0.6631 -7.6472 2.1483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259718690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = -6.840600 kcal Electronic energy + Delta-G solvation = -16870.348255 eV Core-core repulsion = 13949.702399 eV Total energy + Delta-G solvation = -2920.645856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.57914 -39.33412 -37.50119 -37.07608 -34.56672 -33.58163 -31.62773 -30.45634 -29.88948 -26.31780 -24.37004 -23.62658 -22.54356 -21.58247 -18.70519 -18.57968 -17.75935 -17.28093 -16.98539 -16.76129 -16.33325 -15.50446 -15.24727 -14.79100 -14.65053 -14.30779 -14.18690 -13.87857 -13.26851 -13.16681 -12.86168 -12.51371 -12.46853 -12.42464 -12.30901 -11.95319 -11.73771 -11.27440 -10.90763 -10.54806 -9.77531 -9.69794 -9.12311 -8.14258 -6.21763 -0.31402 0.16726 0.83413 1.23657 1.44157 1.45340 1.58825 1.76421 2.46719 2.49895 3.19719 3.31684 3.59226 3.77770 3.91531 3.94090 4.15129 4.19495 4.37461 4.58735 4.68476 4.72435 4.94592 5.04029 5.16608 5.33986 5.38256 5.44565 5.55949 5.82584 6.00231 6.20098 6.34874 6.66069 6.92508 7.45702 8.98207 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.040518 B = 0.003778 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.893310 B = 7408.951769 C = 7504.264075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.006 4.006 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.039 3.961 10 C 0.183 3.817 11 H 0.117 0.883 12 N -0.823 5.823 13 C 0.006 3.994 14 C -0.214 4.214 15 C -0.136 4.136 16 C -0.057 4.057 17 C -0.122 4.122 18 C -0.016 4.016 19 Cl -0.048 7.048 20 C -0.109 4.109 21 C 0.029 3.971 22 O -0.205 6.205 23 H 0.260 0.740 24 H -0.001 1.001 25 H -0.013 1.013 26 H 0.341 0.659 27 H 0.346 0.654 28 H 0.179 0.821 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -19.949 -2.036 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.088 0.912 9 C 0.002 3.998 10 C 0.071 3.929 11 H 0.134 0.866 12 N -0.351 5.351 13 C -0.043 4.043 14 C -0.233 4.233 15 C -0.137 4.137 16 C -0.075 4.075 17 C -0.140 4.140 18 C -0.043 4.043 19 Cl -0.019 7.019 20 C -0.128 4.128 21 C -0.018 4.018 22 O -0.107 6.107 23 H 0.069 0.931 24 H 0.018 0.982 25 H 0.006 0.994 26 H 0.154 0.846 27 H 0.159 0.841 28 H 0.197 0.803 29 H 0.185 0.815 30 H 0.188 0.812 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.415 -19.110 -1.881 19.207 hybrid contribution -0.516 0.073 0.376 0.642 sum -0.101 -19.037 -1.505 19.096 Atomic orbital electron populations 1.70120 1.07834 1.27434 1.52786 1.25942 0.95640 1.03268 0.95362 0.85383 0.79239 0.78955 0.77329 1.18403 1.20677 1.21073 1.21463 0.93746 0.90764 1.48488 0.91235 1.19013 0.93297 0.92426 0.95050 1.20456 0.92918 0.84695 0.94835 0.86573 1.58642 1.18101 1.55142 1.03224 1.24429 0.96772 0.96840 0.86294 1.22591 1.05785 0.95001 0.99924 1.20351 1.02065 0.97843 0.93491 1.20586 0.95166 0.90456 1.01297 1.20985 0.99937 1.01098 0.91975 1.20515 0.98816 0.91424 0.93529 1.98376 1.71414 1.51800 1.80324 1.19781 0.99827 0.91765 1.01417 1.19765 0.99694 0.88405 0.93964 1.83925 1.57919 1.31068 1.37815 0.93097 0.98245 0.99445 0.84590 0.84083 0.80328 0.81546 0.81222 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.51 -28.08 8.84 25.60 0.23 -27.85 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.04 2.04 4.60 29.85 0.14 2.18 16 10 C 0.18 7.21 3.13 44.17 0.14 7.35 16 11 H 0.12 4.27 8.12 -2.39 -0.02 4.25 16 12 N -0.82 -29.67 8.93 -171.80 -1.53 -31.20 16 13 C 0.01 0.23 6.06 24.72 0.15 0.38 16 14 C -0.21 -6.70 10.99 23.54 0.26 -6.45 16 15 C -0.14 -3.99 6.40 -20.21 -0.13 -4.12 16 16 C -0.06 -1.22 10.05 22.20 0.22 -1.00 16 17 C -0.12 -2.31 9.75 22.06 0.22 -2.10 16 18 C -0.02 -0.35 6.31 22.35 0.14 -0.21 16 19 Cl -0.05 -0.90 28.93 -2.72 -0.08 -0.98 16 20 C -0.11 -2.89 9.84 22.37 0.22 -2.67 16 21 C 0.03 0.94 7.42 22.98 0.17 1.11 16 22 O -0.21 -7.58 10.40 -9.15 -0.10 -7.68 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.34 12.55 8.84 -89.69 -0.79 11.76 16 27 H 0.35 10.10 9.06 -89.70 -0.81 9.28 16 28 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -65.93 291.84 2.39 -63.55 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.43 Total: 20.16 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 2.21 Total: -33.24 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -1.25 Total: -88.37 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.10 Total: -7.68 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -65.93 2.39 -63.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259718690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.707 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds