Wall clock time and date at job start Mon Mar 30 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.32628 * 60.00216 * 9 7 2 11 11 C 1.53103 * 109.32132 * 179.63798 * 9 7 2 12 12 C 1.52720 * 109.57980 * 163.61651 * 11 9 7 13 13 C 1.50315 * 110.66529 * 43.00192 * 12 11 9 14 14 O 1.21292 * 119.94402 * 100.19845 * 13 12 11 15 15 N 1.34531 * 120.10550 * 280.17409 * 13 12 11 16 16 C 1.40189 * 118.70793 * 4.87452 * 15 13 12 17 17 C 1.38849 * 120.41098 * 229.64419 * 16 15 13 18 18 Cl 1.73595 * 120.13198 * 358.93665 * 17 16 15 19 19 C 1.38264 * 119.73485 * 178.91023 * 17 16 15 20 20 C 1.38307 * 120.05064 * 0.02562 * 19 17 16 21 21 C 1.38282 * 120.23708 * 0.32221 * 20 19 17 22 22 C 1.38145 * 119.98191 * 359.94351 * 21 20 19 23 23 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46389 * 283.45920 * 11 9 7 25 25 H 1.08993 * 109.46197 * 43.43648 * 11 9 7 26 26 H 1.08993 * 109.09894 * 282.75893 * 12 11 9 27 27 H 1.08999 * 109.28778 * 163.35997 * 12 11 9 28 28 H 0.96997 * 120.64910 * 184.88764 * 15 13 12 29 29 H 1.08002 * 119.97006 * 180.02562 * 19 17 16 30 30 H 1.07998 * 119.88180 * 180.30812 * 20 19 17 31 31 H 1.08002 * 120.01060 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6251 -2.5550 -0.8888 11 6 2.2490 -3.6602 -0.0070 12 6 1.5380 -4.9491 0.3998 13 6 0.1986 -5.0518 -0.2747 14 8 0.0679 -5.7495 -1.2582 15 7 -0.8554 -4.3713 0.2110 16 6 -0.6532 -3.4935 1.2851 17 6 -1.4737 -3.5508 2.4038 18 17 -2.7776 -4.6948 2.4703 19 6 -1.2476 -2.6935 3.4648 20 6 -0.2082 -1.7828 3.4099 21 6 0.6048 -1.7203 2.2931 22 6 0.3806 -2.5705 1.2276 23 1 -0.4850 -0.8401 -0.0004 24 1 2.6613 -3.7773 -1.0093 25 1 3.0558 -3.4510 0.6953 26 1 1.3975 -4.9530 1.4806 27 1 2.1509 -5.8040 0.1139 28 1 -1.7381 -4.4860 -0.1743 29 1 -1.8832 -2.7352 4.3369 30 1 -0.0310 -1.1178 4.2423 31 1 1.4152 -1.0074 2.2540 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:53 Heat of formation + Delta-G solvation = -30.573005 kcal Electronic energy + Delta-G solvation = -18366.433711 eV Core-core repulsion = 15444.758741 eV Total energy + Delta-G solvation = -2921.674971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60411 -38.25781 -36.37851 -35.05848 -34.55966 -32.32820 -29.87016 -29.05064 -27.17049 -23.85417 -23.43032 -22.00451 -20.01149 -19.51341 -17.56196 -16.96157 -16.47373 -15.69102 -15.40632 -14.20108 -14.04406 -13.87392 -13.77460 -13.43242 -13.03656 -12.94110 -12.77120 -11.80989 -11.44309 -11.27868 -11.09599 -10.94919 -10.80883 -10.69957 -10.31361 -10.20742 -10.03904 -9.81945 -9.38488 -8.78936 -8.61792 -7.94603 -7.79603 -6.49579 -4.29423 1.60788 1.80770 2.41932 2.97717 3.34323 3.34601 3.50980 3.57704 4.19474 4.36953 4.90936 5.09396 5.31358 5.39085 5.52016 5.68039 5.83859 5.86707 5.94214 6.10464 6.26908 6.35497 6.44469 6.56311 6.79825 6.82020 7.03998 7.20465 7.34772 7.43384 7.62189 7.98164 8.24433 8.47971 8.65765 9.43028 10.84305 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.009009 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.062837 B = 3107.369454 C = 3997.069666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 1.065 2.935 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.602 4.602 8 H 0.058 0.942 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.088 4.088 12 C -0.144 4.144 13 C 0.534 3.466 14 O -0.549 6.549 15 N -0.664 5.664 16 C 0.121 3.879 17 C -0.057 4.057 18 Cl -0.086 7.086 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.050 4.050 22 C -0.041 4.041 23 H 0.273 0.727 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.405 0.595 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -4.870 7.317 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.640 4.640 8 H 0.076 0.924 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.126 4.126 12 C -0.184 4.184 13 C 0.324 3.676 14 O -0.427 6.427 15 N -0.311 5.311 16 C 0.027 3.973 17 C -0.086 4.086 18 Cl -0.058 7.058 19 C -0.135 4.135 20 C -0.145 4.145 21 C -0.069 4.069 22 C -0.044 4.044 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.243 0.757 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.533 -3.724 6.822 7.791 hybrid contribution -0.608 -1.659 -0.115 1.771 sum -1.141 -5.383 6.707 8.676 Atomic orbital electron populations 1.70765 1.06792 1.31181 1.44066 1.25819 0.96469 1.02550 0.93496 0.83581 0.74789 0.75202 0.77123 1.21342 1.21202 1.20868 1.21864 0.94368 0.90474 1.57267 0.92387 1.18063 0.92572 0.95232 0.90436 0.94800 1.21467 0.98573 0.90960 1.01624 1.21761 0.93294 1.01887 1.01439 1.20657 0.86392 0.77296 0.83280 1.90689 1.85113 1.40935 1.25965 1.43468 1.11870 1.42335 1.33468 1.17460 0.98413 0.94074 0.87368 1.20769 0.94352 0.97391 0.96085 1.98318 1.48772 1.60245 1.98427 1.20721 0.99304 0.96210 0.97231 1.21162 0.95608 0.98551 0.99160 1.21387 0.98557 0.96480 0.90480 1.20663 0.95015 0.90689 0.97987 0.91459 0.91814 0.90804 0.89957 0.89165 0.75660 0.85681 0.85799 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 12.84 55.43 0.71 -23.64 16 2 C 0.02 0.59 4.12 -17.82 -0.07 0.52 16 3 Si 1.07 22.82 29.90 -169.99 -5.08 17.74 16 4 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.60 -14.78 7.19 -34.44 -0.25 -15.02 16 8 H 0.06 1.41 7.73 -52.49 -0.41 1.01 16 9 C 0.06 1.25 1.47 -92.96 -0.14 1.11 16 10 H 0.03 0.87 7.42 -51.93 -0.39 0.49 16 11 C -0.09 -1.68 5.42 -26.82 -0.15 -1.83 16 12 C -0.14 -2.48 5.38 -28.21 -0.15 -2.63 16 13 C 0.53 10.46 6.50 -11.28 -0.07 10.39 16 14 O -0.55 -12.13 17.94 5.55 0.10 -12.03 16 15 N -0.66 -12.39 4.59 -10.02 -0.05 -12.44 16 16 C 0.12 2.30 5.36 -83.64 -0.45 1.86 16 17 C -0.06 -0.99 6.34 -39.35 -0.25 -1.24 16 18 Cl -0.09 -1.30 28.33 -51.86 -1.47 -2.77 16 19 C -0.12 -1.84 9.83 -39.55 -0.39 -2.23 16 20 C -0.13 -2.12 10.04 -39.54 -0.40 -2.52 16 21 C -0.05 -1.00 7.99 -39.60 -0.32 -1.32 16 22 C -0.04 -0.85 2.84 -104.57 -0.30 -1.14 16 23 H 0.27 7.54 5.98 -40.82 -0.24 7.30 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.32 8.01 -51.93 -0.42 0.91 16 26 H 0.08 1.34 7.22 -51.93 -0.37 0.97 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.40 7.13 8.75 -40.82 -0.36 6.77 16 29 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.15 3.09 6.15 -52.49 -0.32 2.77 16 LS Contribution 271.05 15.07 4.08 4.08 Total: -1.00 -27.79 271.05 -7.62 -35.41 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -2.99 Total: 7.70 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.92 Total: -14.06 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.67 Total: -36.08 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.10 Total: -12.03 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.08 Total: 17.74 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.47 Total: -2.77 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.79 -7.62 -35.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.838 kcal (2) G-P(sol) polarization free energy of solvation -27.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds