Wall clock time and date at job start Mon Mar 30 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.32628 * 60.00216 * 9 7 2 11 11 C 1.53103 * 109.32132 * 179.63798 * 9 7 2 12 12 C 1.52720 * 109.57980 * 163.61651 * 11 9 7 13 13 C 1.50315 * 110.66529 * 43.00192 * 12 11 9 14 14 O 1.21292 * 119.94402 * 100.19845 * 13 12 11 15 15 N 1.34531 * 120.10550 * 280.17409 * 13 12 11 16 16 C 1.40189 * 118.70793 * 4.87452 * 15 13 12 17 17 C 1.38849 * 120.41098 * 229.64419 * 16 15 13 18 18 Cl 1.73595 * 120.13198 * 358.93665 * 17 16 15 19 19 C 1.38264 * 119.73485 * 178.91023 * 17 16 15 20 20 C 1.38307 * 120.05064 * 0.02562 * 19 17 16 21 21 C 1.38282 * 120.23708 * 0.32221 * 20 19 17 22 22 C 1.38145 * 119.98191 * 359.94351 * 21 20 19 23 23 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46389 * 283.45920 * 11 9 7 25 25 H 1.08993 * 109.46197 * 43.43648 * 11 9 7 26 26 H 1.08993 * 109.09894 * 282.75893 * 12 11 9 27 27 H 1.08999 * 109.28778 * 163.35997 * 12 11 9 28 28 H 0.96997 * 120.64910 * 184.88764 * 15 13 12 29 29 H 1.08002 * 119.97006 * 180.02562 * 19 17 16 30 30 H 1.07998 * 119.88180 * 180.30812 * 20 19 17 31 31 H 1.08002 * 120.01060 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6251 -2.5550 -0.8888 11 6 2.2490 -3.6602 -0.0070 12 6 1.5380 -4.9491 0.3998 13 6 0.1986 -5.0518 -0.2747 14 8 0.0679 -5.7495 -1.2582 15 7 -0.8554 -4.3713 0.2110 16 6 -0.6532 -3.4935 1.2851 17 6 -1.4737 -3.5508 2.4038 18 17 -2.7776 -4.6948 2.4703 19 6 -1.2476 -2.6935 3.4648 20 6 -0.2082 -1.7828 3.4099 21 6 0.6048 -1.7203 2.2931 22 6 0.3806 -2.5705 1.2276 23 1 -0.4850 -0.8401 -0.0004 24 1 2.6613 -3.7773 -1.0093 25 1 3.0558 -3.4510 0.6953 26 1 1.3975 -4.9530 1.4806 27 1 2.1509 -5.8040 0.1139 28 1 -1.7381 -4.4860 -0.1743 29 1 -1.8832 -2.7352 4.3369 30 1 -0.0310 -1.1178 4.2423 31 1 1.4152 -1.0074 2.2540 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:53 Heat of formation + Delta-G solvation = -46.266521 kcal Electronic energy + Delta-G solvation = -18367.114233 eV Core-core repulsion = 15444.758741 eV Total energy + Delta-G solvation = -2922.355492 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.11817 -39.77423 -37.75100 -36.58227 -36.13294 -34.04612 -31.38589 -30.49512 -28.81215 -25.64445 -24.95057 -23.45979 -21.57840 -21.02650 -19.16468 -18.66823 -17.96929 -17.17024 -16.92101 -15.74120 -15.62778 -15.44320 -15.39985 -14.89068 -14.70517 -14.39205 -14.18593 -13.47532 -12.90761 -12.74343 -12.64280 -12.42828 -12.39496 -12.03494 -11.98208 -11.85035 -11.60872 -11.33375 -10.93391 -10.61135 -10.49058 -9.44444 -9.25794 -8.47699 -6.28995 0.17254 0.40018 1.08768 1.43601 1.60202 1.64629 1.82657 2.11689 2.59580 2.76071 3.23872 3.45175 3.86983 3.99909 4.12722 4.28517 4.37729 4.48001 4.48816 4.64043 4.74988 4.84376 5.00391 5.13123 5.23232 5.32854 5.47151 5.68640 5.80914 5.89648 6.10561 6.15894 6.28569 6.66873 6.95690 7.50518 8.84172 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.009009 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.062837 B = 3107.369454 C = 3997.069666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 1.105 2.895 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.285 1.285 7 C -0.605 4.605 8 H 0.056 0.944 9 C 0.055 3.945 10 H -0.010 1.010 11 C -0.084 4.084 12 C -0.134 4.134 13 C 0.529 3.471 14 O -0.581 6.581 15 N -0.660 5.660 16 C 0.110 3.890 17 C -0.059 4.059 18 Cl -0.066 7.066 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.070 4.070 22 C -0.058 4.058 23 H 0.261 0.739 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.407 0.593 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -4.972 9.342 10.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.216 4.216 3 Si 0.928 3.072 4 H -0.214 1.214 5 H -0.189 1.189 6 H -0.211 1.211 7 C -0.643 4.643 8 H 0.074 0.926 9 C 0.036 3.964 10 H 0.008 0.992 11 C -0.122 4.122 12 C -0.174 4.174 13 C 0.319 3.681 14 O -0.461 6.461 15 N -0.307 5.307 16 C 0.016 3.984 17 C -0.087 4.087 18 Cl -0.037 7.037 19 C -0.123 4.123 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.060 4.060 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.246 0.754 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.473 -3.836 8.867 9.672 hybrid contribution -0.679 -1.658 -0.726 1.933 sum -1.151 -5.494 8.141 9.888 Atomic orbital electron populations 1.70865 1.07739 1.30449 1.46595 1.26901 0.96416 1.05482 0.92801 0.83065 0.74748 0.72159 0.77190 1.21352 1.18880 1.21097 1.22143 0.94412 0.91618 1.56089 0.92572 1.17940 0.92804 0.95733 0.89881 0.99170 1.21391 0.98241 0.90779 1.01745 1.21719 0.92085 1.01629 1.01975 1.21092 0.87274 0.76760 0.82941 1.90666 1.85676 1.42444 1.27302 1.43459 1.11918 1.41884 1.33437 1.17466 0.98773 0.94123 0.88047 1.20900 0.94374 0.97803 0.95660 1.98328 1.47554 1.59463 1.98343 1.21120 0.98852 0.94669 0.97693 1.21473 0.94620 0.98664 0.98808 1.21318 0.99348 0.96425 0.91782 1.20379 0.95805 0.92234 0.97594 0.92806 0.92462 0.89458 0.88577 0.86891 0.75438 0.82152 0.82618 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.02 12.84 21.45 0.28 -50.75 16 2 C -0.01 -0.76 4.12 84.65 0.35 -0.41 16 3 Si 1.10 45.83 29.90 68.60 2.05 47.88 16 4 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.60 -30.09 7.19 25.60 0.18 -29.91 16 8 H 0.06 2.74 7.73 -2.91 -0.02 2.72 16 9 C 0.05 2.52 1.47 -12.31 -0.02 2.50 16 10 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 11 C -0.08 -3.18 5.42 30.54 0.17 -3.01 16 12 C -0.13 -4.51 5.38 29.63 0.16 -4.35 16 13 C 0.53 20.71 6.50 87.57 0.57 21.28 16 14 O -0.58 -25.86 17.94 -3.07 -0.05 -25.92 16 15 N -0.66 -24.66 4.59 -304.14 -1.40 -26.06 16 16 C 0.11 4.11 5.36 38.06 0.20 4.31 16 17 C -0.06 -1.89 6.34 22.42 0.14 -1.75 16 18 Cl -0.07 -1.83 28.33 -2.72 -0.08 -1.91 16 19 C -0.10 -2.98 9.83 22.29 0.22 -2.76 16 20 C -0.12 -3.63 10.04 22.30 0.22 -3.40 16 21 C -0.07 -2.73 7.99 22.26 0.18 -2.56 16 22 C -0.06 -2.38 2.84 -19.83 -0.06 -2.44 16 23 H 0.26 14.82 5.98 -92.71 -0.55 14.27 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.09 3.06 8.01 -2.39 -0.02 3.04 16 26 H 0.10 2.97 7.22 -2.39 -0.02 2.95 16 27 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.41 14.44 8.75 -92.71 -0.81 13.62 16 29 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 31 H 0.13 5.39 6.15 -2.91 -0.02 5.37 16 Total: -1.00 -60.38 271.05 3.69 -56.69 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.57 Total: 22.56 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 2.32 Total: -22.49 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.12 Total: -76.81 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.05 Total: 47.88 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -60.38 3.69 -56.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.420 kcal (2) G-P(sol) polarization free energy of solvation -60.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds