Wall clock time and date at job start Mon Mar 30 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.31579 * 300.36270 * 9 7 2 11 11 C 1.53100 * 109.32021 * 180.90296 * 9 7 2 12 12 C 1.52838 * 109.51477 * 196.55350 * 11 9 7 13 13 C 1.50317 * 110.56431 * 316.72170 * 12 11 9 14 14 O 1.21293 * 119.95065 * 259.93569 * 13 12 11 15 15 N 1.34535 * 120.10199 * 79.96356 * 13 12 11 16 16 C 1.40185 * 118.71040 * 355.12468 * 15 13 12 17 17 C 1.38847 * 120.41455 * 130.35489 * 16 15 13 18 18 Cl 1.73604 * 120.12812 * 1.11007 * 17 16 15 19 19 C 1.38257 * 119.73804 * 181.08687 * 17 16 15 20 20 C 1.38303 * 120.05107 * 359.97438 * 19 17 16 21 21 C 1.38279 * 120.23640 * 359.66955 * 20 19 17 22 22 C 1.38147 * 119.98281 * 0.06608 * 21 20 19 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46615 * 316.56590 * 11 9 7 25 25 H 1.08996 * 109.46479 * 76.54230 * 11 9 7 26 26 H 1.08998 * 109.25728 * 196.44457 * 12 11 9 27 27 H 1.09002 * 109.26109 * 76.99897 * 12 11 9 28 28 H 0.97005 * 120.64515 * 175.15114 * 15 13 12 29 29 H 1.08006 * 119.97572 * 179.97438 * 19 17 16 30 30 H 1.08004 * 119.88376 * 179.64844 * 20 19 17 31 31 H 1.08005 * 120.01045 * 180.08174 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6209 -2.5517 0.8872 11 6 2.2489 -3.6601 0.0216 12 6 1.5400 -4.9506 -0.3884 13 6 0.1974 -5.0508 0.2801 14 8 0.0619 -5.7450 1.2655 15 7 -0.8543 -4.3721 -0.2130 16 6 -0.6470 -3.4982 -1.2894 17 6 -1.4622 -3.5596 -2.4117 18 17 -2.7666 -4.7031 -2.4797 19 6 -1.2312 -2.7061 -3.4746 20 6 -0.1921 -1.7951 -3.4181 21 6 0.6155 -1.7285 -2.2976 22 6 0.3863 -2.5749 -1.2301 23 1 -0.4849 -0.8401 0.0004 24 1 3.0610 -3.4545 -0.6759 25 1 2.6538 -3.7720 1.0274 26 1 2.1513 -5.8047 -0.0971 27 1 1.4044 -4.9583 -1.4700 28 1 -1.7388 -4.4850 0.1690 29 1 -1.8626 -2.7508 -4.3497 30 1 -0.0105 -1.1335 -4.2523 31 1 1.4250 -1.0147 -2.2569 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723561.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:55 Heat of formation + Delta-G solvation = -30.694876 kcal Electronic energy + Delta-G solvation = -18363.854167 eV Core-core repulsion = 15442.173911 eV Total energy + Delta-G solvation = -2921.680255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.60172 -38.25735 -36.37711 -35.05752 -34.55760 -32.32236 -29.87513 -29.05112 -27.16866 -23.85588 -23.43002 -22.00450 -20.01018 -19.51650 -17.56032 -16.96143 -16.47446 -15.69050 -15.40539 -14.20108 -14.04251 -13.87498 -13.77321 -13.43276 -13.03469 -12.94269 -12.77144 -11.80816 -11.44194 -11.28380 -11.09600 -10.94877 -10.80947 -10.70122 -10.31015 -10.20719 -10.04151 -9.82034 -9.38483 -8.78792 -8.61725 -7.94897 -7.79665 -6.49686 -4.29381 1.60657 1.80651 2.41812 2.97721 3.34352 3.34620 3.50999 3.57685 4.19341 4.36990 4.90969 5.09393 5.31333 5.39157 5.51934 5.67700 5.83524 5.86638 5.94147 6.10421 6.26864 6.35367 6.44411 6.56181 6.79954 6.81921 7.03875 7.20413 7.34704 7.43410 7.62144 7.98164 8.24454 8.47955 8.65821 9.43135 10.84374 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.009002 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.558022 B = 3109.639753 C = 3998.191190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 1.065 2.935 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.602 4.602 8 H 0.058 0.942 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.088 4.088 12 C -0.144 4.144 13 C 0.534 3.466 14 O -0.549 6.549 15 N -0.664 5.664 16 C 0.121 3.879 17 C -0.057 4.057 18 Cl -0.086 7.086 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.051 4.051 22 C -0.041 4.041 23 H 0.273 0.727 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.405 0.595 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 -4.898 -7.321 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.640 4.640 8 H 0.076 0.924 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.126 4.126 12 C -0.184 4.184 13 C 0.324 3.676 14 O -0.427 6.427 15 N -0.311 5.311 16 C 0.027 3.973 17 C -0.086 4.086 18 Cl -0.058 7.058 19 C -0.135 4.135 20 C -0.145 4.145 21 C -0.069 4.069 22 C -0.043 4.043 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.243 0.757 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.501 -3.750 -6.825 7.803 hybrid contribution -0.608 -1.660 0.113 1.771 sum -1.109 -5.409 -6.712 8.691 Atomic orbital electron populations 1.70762 1.06798 1.31175 1.44069 1.25816 0.96469 1.02550 0.93491 0.83581 0.74789 0.75204 0.77121 1.21344 1.20870 1.21201 1.21866 0.94363 0.90472 1.57272 0.92392 1.18059 0.92639 0.95229 0.90398 0.94811 1.21488 0.98586 0.90931 1.01601 1.21785 0.93236 1.01890 1.01472 1.20664 0.86451 0.77255 0.83265 1.90689 1.85112 1.41060 1.25840 1.43471 1.11812 1.42583 1.33279 1.17460 0.98451 0.94116 0.87281 1.20770 0.94385 0.97417 0.96015 1.98319 1.48735 1.60282 1.98428 1.20720 0.99296 0.96238 0.97215 1.21163 0.95631 0.98546 0.99141 1.21389 0.98569 0.96507 0.90470 1.20661 0.94984 0.90675 0.98004 0.91469 0.90830 0.91774 0.89175 0.89941 0.75659 0.85678 0.85795 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 12.86 55.43 0.71 -23.65 16 2 C 0.02 0.59 4.14 -17.82 -0.07 0.52 16 3 Si 1.07 22.83 29.90 -169.99 -5.08 17.74 16 4 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.60 -14.77 7.18 -34.44 -0.25 -15.02 16 8 H 0.06 1.41 7.73 -52.48 -0.41 1.00 16 9 C 0.06 1.24 1.45 -92.96 -0.14 1.11 16 10 H 0.03 0.87 7.41 -51.93 -0.38 0.49 16 11 C -0.09 -1.68 5.43 -26.76 -0.15 -1.82 16 12 C -0.14 -2.48 5.38 -28.15 -0.15 -2.63 16 13 C 0.53 10.46 6.50 -11.28 -0.07 10.38 16 14 O -0.55 -12.13 17.94 5.55 0.10 -12.03 16 15 N -0.66 -12.39 4.59 -10.02 -0.05 -12.44 16 16 C 0.12 2.31 5.36 -83.64 -0.45 1.86 16 17 C -0.06 -0.98 6.34 -39.35 -0.25 -1.23 16 18 Cl -0.09 -1.30 28.33 -51.86 -1.47 -2.77 16 19 C -0.12 -1.84 9.83 -39.55 -0.39 -2.23 16 20 C -0.13 -2.12 10.04 -39.54 -0.40 -2.51 16 21 C -0.05 -1.01 8.02 -39.60 -0.32 -1.33 16 22 C -0.04 -0.84 2.86 -104.57 -0.30 -1.14 16 23 H 0.27 7.54 5.99 -40.82 -0.24 7.30 16 24 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.34 7.22 -51.93 -0.37 0.97 16 28 H 0.40 7.13 8.75 -40.82 -0.36 6.77 16 29 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.15 3.09 6.16 -52.48 -0.32 2.76 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -27.80 271.13 -7.62 -35.42 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -2.99 Total: 7.69 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.93 Total: -14.05 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.67 Total: -36.09 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.10 Total: -12.03 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.08 Total: 17.74 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.47 Total: -2.77 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.80 -7.62 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723561.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.725 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds