Wall clock time and date at job start Mon Mar 30 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37685 * 125.06830 * 2 1 4 4 C 1.39125 * 133.49173 * 359.94454 * 3 2 1 5 5 C 1.37852 * 119.77196 * 180.33988 * 4 3 2 6 6 Cl 1.73595 * 119.68507 * 180.02562 * 5 4 3 7 7 C 1.38936 * 120.63762 * 0.02562 * 5 4 3 8 8 C 1.36620 * 120.51597 * 0.03183 * 7 5 4 9 9 C 1.39637 * 119.78101 * 359.93505 * 8 7 5 10 10 C 1.46507 * 134.01439 * 180.02562 * 9 8 7 11 11 C 1.34214 * 107.00160 * 180.02562 * 10 9 8 12 12 C 1.50703 * 125.03626 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47247 * 155.23152 * 12 11 10 14 14 O 1.42904 * 109.47200 * 35.23244 * 12 11 10 15 15 C 1.50701 * 109.47268 * 275.23406 * 12 11 10 16 16 H 1.07999 * 119.99496 * 359.97438 * 15 12 11 17 17 C 1.37868 * 120.00183 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00210 * 180.02562 * 17 15 12 19 19 Si 1.86805 * 120.00245 * 0.02562 * 17 15 12 20 20 H 1.48492 * 109.47024 * 269.99884 * 19 17 15 21 21 H 1.48507 * 109.46680 * 30.00007 * 19 17 15 22 22 H 1.48498 * 109.47232 * 149.99693 * 19 17 15 23 23 H 1.08997 * 109.46919 * 265.06119 * 1 2 3 24 24 H 1.09010 * 109.46765 * 25.05709 * 1 2 3 25 25 H 1.09000 * 109.47522 * 145.05579 * 1 2 3 26 26 H 1.07999 * 120.11476 * 0.36051 * 4 3 2 27 27 H 1.07999 * 119.74573 * 180.02562 * 7 5 4 28 28 H 1.07998 * 120.11129 * 180.02562 * 8 7 5 29 29 H 1.08005 * 126.49423 * 0.05867 * 10 9 8 30 30 H 0.96697 * 114.00154 * 294.94081 * 14 12 11 31 31 H 0.97003 * 120.00319 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2561 1.1269 0.0000 4 6 1.9801 2.4905 -0.0010 5 6 3.0172 3.3987 -0.0078 6 17 2.6703 5.0997 -0.0083 7 6 4.3374 2.9659 -0.0142 8 6 4.6299 1.6314 -0.0145 9 6 3.5946 0.6944 -0.0070 10 6 3.5469 -0.7699 -0.0046 11 6 2.2513 -1.1202 0.0030 12 6 1.7383 -2.5373 0.0085 13 1 0.7395 -2.5604 0.4445 14 8 2.6151 -3.3583 0.7826 15 6 1.6815 -3.0564 -1.4052 16 1 1.9861 -2.4234 -2.2255 17 6 1.2409 -4.3394 -1.6512 18 7 1.1918 -4.7927 -2.8848 19 14 0.7135 -5.4341 -0.2324 20 1 1.8854 -6.1981 0.2655 21 1 0.1676 -4.5944 0.8642 22 1 -0.3321 -6.3798 -0.6990 23 1 -0.3633 -0.0885 1.0238 24 1 -0.3633 0.9310 -0.4353 25 1 -0.3634 -0.8424 -0.5886 26 1 0.9570 2.8363 0.0039 27 1 5.1386 3.6900 -0.0190 28 1 5.6585 1.3022 -0.0191 29 1 4.3937 -1.4402 -0.0078 30 1 3.5027 -3.4471 0.4093 31 1 0.8814 -5.6952 -3.0580 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259743687.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:20 Heat of formation + Delta-G solvation = -17.026350 kcal Electronic energy + Delta-G solvation = -17376.515097 eV Core-core repulsion = 14455.427554 eV Total energy + Delta-G solvation = -2921.087544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.35732 -38.85222 -37.73626 -36.85626 -34.54745 -33.65807 -31.56239 -30.76685 -28.67323 -27.12100 -25.02954 -22.80802 -22.55072 -20.67440 -19.59679 -18.18090 -17.62018 -17.08370 -16.82534 -16.23094 -15.66840 -15.51683 -15.12713 -15.01630 -14.52192 -14.25135 -14.12553 -13.80637 -13.34956 -13.24072 -12.96242 -12.91687 -12.75016 -12.24929 -11.93470 -11.75565 -11.68035 -11.38914 -10.92878 -10.83714 -10.50869 -9.02616 -8.55219 -8.40982 -6.60231 0.03230 0.54894 1.10793 1.40935 1.43983 1.56992 1.74172 1.95120 2.32824 2.82369 2.92189 3.70722 3.76917 3.89138 3.93123 4.12446 4.27082 4.38758 4.46705 4.50742 4.63189 4.72410 4.81980 4.96199 5.17186 5.25762 5.27307 5.46917 5.74277 5.91300 5.99137 6.22898 6.35477 6.54075 6.99112 7.19021 8.72137 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.039815 B = 0.004820 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.086375 B = 5807.795704 C = 6027.294174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.482 5.482 3 C 0.083 3.917 4 C -0.123 4.123 5 C -0.024 4.024 6 Cl -0.065 7.065 7 C -0.141 4.141 8 C -0.061 4.061 9 C -0.123 4.123 10 C -0.222 4.222 11 C 0.084 3.916 12 C 0.260 3.740 13 H 0.069 0.931 14 O -0.575 6.575 15 C -0.556 4.556 16 H 0.036 0.964 17 C 0.040 3.960 18 N -0.928 5.928 19 Si 0.971 3.029 20 H -0.270 1.270 21 H -0.259 1.259 22 H -0.299 1.299 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.381 0.619 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 14.469 7.772 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.166 5.166 3 C -0.024 4.024 4 C -0.144 4.144 5 C -0.052 4.052 6 Cl -0.036 7.036 7 C -0.161 4.161 8 C -0.080 4.080 9 C -0.129 4.129 10 C -0.246 4.246 11 C -0.024 4.024 12 C 0.201 3.799 13 H 0.087 0.913 14 O -0.382 6.382 15 C -0.593 4.593 16 H 0.054 0.946 17 C -0.162 4.162 18 N -0.566 5.566 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.184 1.184 22 H -0.227 1.227 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.159 0.841 27 H 0.173 0.827 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.230 0.770 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.458 14.395 8.038 16.552 hybrid contribution -0.003 -0.632 -0.404 0.751 sum 1.455 13.763 7.634 15.805 Atomic orbital electron populations 1.22172 0.75912 1.05148 1.04023 1.43900 1.06954 1.03340 1.62398 1.18297 0.90628 0.88321 1.05146 1.19849 0.99880 0.88108 1.06562 1.20443 0.94226 0.84475 1.06022 1.98343 1.95517 1.12670 1.97042 1.20703 0.94875 0.95996 1.04524 1.20456 0.98810 0.91101 0.97624 1.19592 0.93059 0.93780 1.06421 1.21496 0.95640 0.93029 1.14460 1.21503 0.91326 0.89698 0.99878 1.18206 0.90174 0.81245 0.90259 0.91340 1.86353 1.27234 1.70515 1.54075 1.21434 1.46504 0.99484 0.91902 0.94599 1.25759 0.93296 0.99085 0.98017 1.70044 1.46530 1.18367 1.21709 0.85347 0.77944 0.78115 0.78866 1.19548 1.18358 1.22693 0.89681 0.87982 0.90398 0.84081 0.82662 0.83058 0.82939 0.76990 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 10.48 127.77 1.34 3.30 16 2 N -0.48 -17.50 3.18 -524.67 -1.67 -19.17 16 3 C 0.08 2.83 6.80 39.03 0.27 3.09 16 4 C -0.12 -3.46 9.65 22.39 0.22 -3.24 16 5 C -0.02 -0.61 6.31 22.35 0.14 -0.47 16 6 Cl -0.06 -1.39 28.93 -2.72 -0.08 -1.47 16 7 C -0.14 -3.40 9.75 22.06 0.22 -3.19 16 8 C -0.06 -1.67 10.05 22.23 0.22 -1.45 16 9 C -0.12 -4.25 6.37 -20.19 -0.13 -4.38 16 10 C -0.22 -8.45 10.41 23.51 0.24 -8.21 16 11 C 0.08 3.44 5.85 40.86 0.24 3.68 16 12 C 0.26 11.65 2.35 29.10 0.07 11.72 16 13 H 0.07 3.07 6.51 -2.39 -0.02 3.06 16 14 O -0.57 -24.30 10.85 -148.98 -1.62 -25.91 16 15 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 16 H 0.04 2.19 7.98 -2.91 -0.02 2.17 16 17 C 0.04 2.20 5.47 84.65 0.46 2.66 16 18 N -0.93 -54.88 13.96 21.44 0.30 -54.59 16 19 Si 0.97 44.40 26.18 68.60 1.80 46.20 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.26 -11.39 6.54 99.48 0.65 -10.74 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.10 2.34 7.85 -2.38 -0.02 2.32 16 25 H 0.08 2.49 7.66 -2.39 -0.02 2.47 16 26 H 0.14 3.37 7.91 -2.91 -0.02 3.35 16 27 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 28 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.15 5.26 7.61 -2.91 -0.02 5.24 16 30 H 0.38 14.18 8.27 -74.06 -0.61 13.57 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -64.20 283.00 2.75 -61.45 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.49 Total: 19.59 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.52 Total: -26.11 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.37 Total: -73.75 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.62 Total: -25.91 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.80 Total: 46.20 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -64.20 2.75 -61.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743687.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.422 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds