Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37699 * 125.06542 * 2 1 4 4 C 1.39120 * 133.49109 * 0.08690 * 3 2 1 5 5 C 1.37847 * 119.76874 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.68310 * 179.97438 * 5 4 3 7 7 C 1.38938 * 120.64084 * 359.88475 * 5 4 3 8 8 C 1.36621 * 120.51215 * 0.07825 * 7 5 4 9 9 C 1.39633 * 119.77869 * 359.97438 * 8 7 5 10 10 C 1.46510 * 134.00356 * 180.28738 * 9 8 7 11 11 C 1.34233 * 106.99709 * 180.10626 * 10 9 8 12 12 C 1.50698 * 125.03439 * 179.89723 * 11 10 9 13 13 H 1.09002 * 109.46875 * 204.69307 * 12 11 10 14 14 O 1.42898 * 109.46994 * 324.69418 * 12 11 10 15 15 C 1.50694 * 109.47166 * 84.69514 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 12 20 20 H 1.48504 * 109.47032 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46816 * 120.00323 * 19 17 15 22 22 H 1.48495 * 109.46630 * 240.00111 * 19 17 15 23 23 H 1.09003 * 109.46457 * 269.95645 * 1 2 3 24 24 H 1.09002 * 109.46975 * 29.95280 * 1 2 3 25 25 H 1.08995 * 109.46955 * 149.95358 * 1 2 3 26 26 H 1.08003 * 120.11647 * 359.94450 * 4 3 2 27 27 H 1.08002 * 119.74600 * 180.02562 * 7 5 4 28 28 H 1.07995 * 120.10473 * 179.97438 * 8 7 5 29 29 H 1.07996 * 126.50488 * 359.97438 * 10 9 8 30 30 H 0.96698 * 114.00284 * 60.00294 * 14 12 11 31 31 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2561 1.1271 0.0000 4 6 1.9801 2.4906 0.0015 5 6 3.0171 3.3988 0.0005 6 17 2.6701 5.0998 0.0017 7 6 4.3374 2.9661 0.0003 8 6 4.6299 1.6316 -0.0004 9 6 3.5946 0.6946 -0.0005 10 6 3.5471 -0.7697 0.0042 11 6 2.2513 -1.1202 -0.0010 12 6 1.7385 -2.5372 -0.0010 13 1 0.7387 -2.5618 -0.4347 14 8 2.6136 -3.3605 -0.7745 15 6 1.6848 -3.0521 1.4143 16 1 1.9918 -2.4169 2.2320 17 6 1.2438 -4.3341 1.6653 18 7 0.8704 -5.1078 0.6694 19 14 1.1845 -4.9749 3.4190 20 1 1.6597 -3.9186 4.3483 21 1 -0.2116 -5.3454 3.7636 22 1 2.0578 -6.1700 3.5389 23 1 -0.3632 -0.0008 1.0277 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3633 -0.8895 -0.5145 26 1 0.9569 2.8364 0.0022 27 1 5.1386 3.6903 0.0000 28 1 5.6585 1.3025 -0.0009 29 1 4.3938 -1.4400 0.0085 30 1 3.5226 -3.3861 -0.4455 31 1 0.5598 -6.0096 0.8461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259743692.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -18.846360 kcal Electronic energy + Delta-G solvation = -17331.932522 eV Core-core repulsion = 14410.766057 eV Total energy + Delta-G solvation = -2921.166465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.32240 -38.76046 -37.54596 -36.78567 -34.38129 -33.61068 -31.49728 -30.57030 -28.39404 -27.09329 -25.20979 -22.83079 -22.52835 -20.63702 -19.20575 -18.16143 -17.57858 -16.87873 -16.73364 -16.24243 -15.82215 -15.37868 -15.12428 -14.80506 -14.29342 -14.23549 -14.08549 -13.39559 -13.28247 -13.18326 -12.91773 -12.85285 -12.74717 -12.23239 -12.13382 -11.77728 -11.64046 -11.34784 -10.82385 -10.56614 -10.44135 -9.02250 -8.55265 -8.18066 -6.47600 0.05429 0.56368 1.11976 1.38242 1.41018 1.52352 1.78611 1.98088 2.37972 2.83961 3.05951 3.72874 3.86035 3.93118 4.07218 4.20819 4.30616 4.42562 4.48179 4.55969 4.65046 4.75345 4.94391 4.99782 5.26858 5.28451 5.48872 5.59694 5.76285 5.90505 5.98030 6.27112 6.39062 6.61204 7.23324 7.39184 8.83071 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.004737 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.842005 B = 5909.028197 C = 6030.583691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.482 5.482 3 C 0.081 3.919 4 C -0.122 4.122 5 C -0.025 4.025 6 Cl -0.065 7.065 7 C -0.141 4.141 8 C -0.062 4.062 9 C -0.121 4.121 10 C -0.229 4.229 11 C 0.082 3.918 12 C 0.289 3.711 13 H 0.042 0.958 14 O -0.567 6.567 15 C -0.572 4.572 16 H 0.052 0.948 17 C 0.036 3.964 18 N -0.893 5.893 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.363 0.637 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 15.178 -0.611 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.166 5.166 3 C -0.026 4.026 4 C -0.143 4.143 5 C -0.052 4.052 6 Cl -0.036 7.036 7 C -0.160 4.160 8 C -0.081 4.081 9 C -0.126 4.126 10 C -0.253 4.253 11 C -0.026 4.026 12 C 0.230 3.770 13 H 0.060 0.940 14 O -0.371 6.371 15 C -0.610 4.610 16 H 0.070 0.930 17 C -0.167 4.167 18 N -0.529 5.529 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.159 0.841 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.210 0.790 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.267 15.015 -1.032 15.221 hybrid contribution 0.052 -0.537 1.105 1.230 sum 2.319 14.478 0.073 14.663 Atomic orbital electron populations 1.22079 0.76070 1.04698 1.03748 1.43932 1.06884 1.03410 1.62346 1.18315 0.90635 0.88312 1.05326 1.19842 0.99862 0.88083 1.06544 1.20431 0.94210 0.84433 1.06174 1.98341 1.95521 1.12686 1.97058 1.20699 0.94853 0.95964 1.04506 1.20447 0.98766 0.91084 0.97762 1.19581 0.93044 0.93696 1.06272 1.21458 0.95537 0.92992 1.15302 1.21967 0.91423 0.90191 0.99018 1.17780 0.88998 0.79250 0.90948 0.94035 1.86548 1.23330 1.70649 1.56548 1.21675 1.47300 0.99499 0.92528 0.93020 1.25789 0.93212 0.96756 1.00977 1.70179 1.41510 1.08492 1.32726 0.85497 0.78054 0.78309 0.79674 1.19426 1.20106 1.20123 0.90808 0.87721 0.90455 0.84145 0.82637 0.83062 0.83182 0.79046 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.30 10.80 127.77 1.38 3.68 16 2 N -0.48 -18.23 3.18 -524.67 -1.67 -19.90 16 3 C 0.08 2.82 6.81 39.03 0.27 3.09 16 4 C -0.12 -3.50 9.73 22.39 0.22 -3.29 16 5 C -0.02 -0.64 6.31 22.34 0.14 -0.50 16 6 Cl -0.06 -1.41 28.93 -2.72 -0.08 -1.49 16 7 C -0.14 -3.42 9.75 22.06 0.22 -3.20 16 8 C -0.06 -1.71 10.05 22.23 0.22 -1.49 16 9 C -0.12 -4.25 6.37 -20.19 -0.13 -4.38 16 10 C -0.23 -9.04 10.37 23.51 0.24 -8.80 16 11 C 0.08 3.55 5.85 40.86 0.24 3.79 16 12 C 0.29 14.39 3.04 29.10 0.09 14.48 16 13 H 0.04 2.25 6.78 -2.39 -0.02 2.23 16 14 O -0.57 -28.69 12.59 -148.98 -1.88 -30.56 16 15 C -0.57 -30.40 8.75 25.60 0.22 -30.18 16 16 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 17 C 0.04 1.94 5.40 84.66 0.46 2.40 16 18 N -0.89 -50.58 12.84 21.45 0.28 -50.30 16 19 Si 0.96 41.90 29.54 68.60 2.03 43.93 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.10 2.44 8.10 -2.39 -0.02 2.42 16 25 H 0.08 2.52 6.81 -2.39 -0.02 2.51 16 26 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 27 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 28 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.15 5.43 7.49 -2.91 -0.02 5.41 16 30 H 0.36 16.10 8.09 -74.06 -0.60 15.50 16 31 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -62.54 287.27 2.81 -59.73 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.57 Total: 22.99 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.57 Total: -24.40 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.39 Total: -70.20 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.88 Total: -30.56 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -62.54 2.81 -59.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743692.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.882 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds