Wall clock time and date at job start Mon Mar 30 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47052 * 270.00658 * 3 2 1 5 5 H 1.48503 * 109.46580 * 30.00213 * 3 2 1 6 6 H 1.48492 * 109.47265 * 150.00296 * 3 2 1 7 7 C 1.37882 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99886 * 170.59033 * 7 2 1 9 9 C 1.50698 * 119.99486 * 350.58253 * 7 2 1 10 10 H 1.09007 * 109.47145 * 54.56129 * 9 7 2 11 11 C 1.52998 * 109.47492 * 294.56049 * 9 7 2 12 12 N 1.46903 * 109.47334 * 176.80379 * 11 9 7 13 13 C 1.50697 * 109.46904 * 174.55559 * 9 7 2 14 14 C 1.33996 * 126.90693 * 60.11183 * 13 9 7 15 15 O 1.34438 * 110.15660 * 180.25873 * 14 13 9 16 16 C 1.34845 * 110.89174 * 359.76828 * 15 14 13 17 17 C 1.40476 * 107.26469 * 359.97438 * 16 15 14 18 18 C 1.39418 * 120.16191 * 179.97438 * 17 16 15 19 19 C 1.37744 * 119.62734 * 0.02562 * 18 17 16 20 20 C 1.38715 * 120.28657 * 0.02562 * 19 18 17 21 21 C 1.37971 * 120.67423 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.03075 * 179.97438 * 21 20 19 23 23 H 0.96995 * 119.99311 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47176 * 296.80002 * 11 9 7 25 25 H 1.08995 * 109.47137 * 56.79936 * 11 9 7 26 26 H 1.00902 * 111.00011 * 184.52735 * 12 11 9 27 27 H 1.00902 * 110.99936 * 308.47749 * 12 11 9 28 28 H 1.08005 * 124.92428 * 359.97438 * 14 13 9 29 29 H 1.08009 * 120.18493 * 180.02562 * 18 17 16 30 30 H 1.07995 * 119.86065 * 179.97438 * 19 18 17 31 31 H 1.08001 * 119.66376 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0737 -1.2002 -0.1534 9 6 1.2663 -2.4904 0.2124 10 1 0.4571 -2.5712 -0.5134 11 6 0.6866 -2.5206 1.6280 12 7 -0.0972 -3.7497 1.8101 13 6 2.2178 -3.6454 0.0344 14 6 3.3293 -3.8888 0.7421 15 8 3.9268 -5.0074 0.2960 16 6 3.2303 -5.5513 -0.7224 17 6 2.1118 -4.7316 -0.9472 18 6 1.2006 -5.0503 -1.9531 19 6 1.4030 -6.1734 -2.7244 20 6 2.5063 -6.9845 -2.5031 21 6 3.4152 -6.6812 -1.5104 22 17 4.7898 -7.7083 -1.2474 23 1 -0.4849 0.8401 0.0004 24 1 1.4993 -2.4972 2.3541 25 1 0.0426 -1.6537 1.7755 26 1 -0.5513 -3.7588 2.7111 27 1 -0.7688 -3.8639 1.0657 28 1 3.6948 -3.2729 1.5505 29 1 0.3407 -4.4201 -2.1265 30 1 0.6993 -6.4241 -3.5044 31 1 2.6550 -7.8629 -3.1136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259746564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:19 Heat of formation + Delta-G solvation = 11.252446 kcal Electronic energy + Delta-G solvation = -17499.061695 eV Core-core repulsion = 14579.200412 eV Total energy + Delta-G solvation = -2919.861283 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.84703 -37.63206 -36.21438 -35.62140 -32.30738 -31.93496 -29.88753 -29.35440 -27.36011 -23.97114 -22.92937 -22.07198 -21.62995 -19.04545 -17.03698 -16.70687 -16.20840 -15.56080 -15.50570 -14.74774 -14.42297 -14.23029 -13.72999 -13.44210 -12.95236 -12.67470 -12.26503 -12.13528 -11.67880 -11.50451 -11.20420 -11.05291 -10.97730 -10.85731 -10.63319 -10.10614 -9.85432 -9.55790 -8.97465 -8.53344 -8.23524 -7.73455 -7.40661 -6.19938 -4.22764 1.19731 1.64122 2.29703 3.11920 3.21858 3.29522 3.30489 3.34221 4.01771 4.32615 5.01156 5.07742 5.12607 5.32253 5.47336 5.60506 5.62882 5.92784 6.07321 6.24071 6.38795 6.57333 6.59220 6.74792 6.77959 6.94520 7.16508 7.30927 7.59198 7.75316 7.84685 7.95571 8.22848 8.30039 8.81256 9.41843 10.88111 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.005633 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.553986 B = 4969.942127 C = 5147.927997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.110 3.890 10 H 0.042 0.958 11 C 0.073 3.927 12 N -0.856 5.856 13 C -0.093 4.093 14 C -0.024 4.024 15 O -0.194 6.194 16 C 0.054 3.946 17 C -0.102 4.102 18 C -0.054 4.054 19 C -0.141 4.141 20 C -0.096 4.096 21 C -0.030 4.030 22 Cl -0.078 7.078 23 H 0.263 0.737 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.321 0.679 27 H 0.331 0.669 28 H 0.203 0.797 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -10.521 -2.027 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.091 3.909 10 H 0.060 0.940 11 C -0.057 4.057 12 N -0.383 5.383 13 C -0.094 4.094 14 C -0.087 4.087 15 O -0.096 6.096 16 C 0.005 3.995 17 C -0.103 4.103 18 C -0.072 4.072 19 C -0.160 4.160 20 C -0.115 4.115 21 C -0.057 4.057 22 Cl -0.049 7.049 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.220 0.780 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.053 -10.958 -1.958 11.542 hybrid contribution -0.372 1.664 0.117 1.709 sum 2.682 -9.294 -1.842 9.846 Atomic orbital electron populations 1.69947 1.05996 1.26962 1.49594 1.24966 0.94821 0.99235 0.94564 0.86598 0.80044 0.83190 0.78317 1.20572 1.21113 1.19658 1.21084 0.94282 0.89880 1.50142 0.92161 1.17318 0.92283 0.88214 0.93077 0.93993 1.21962 0.96129 0.89149 0.98507 1.59010 1.31384 1.41905 1.05966 1.21647 0.97605 0.96292 0.93849 1.23613 0.95272 0.87665 1.02139 1.83994 1.47355 1.36337 1.41902 1.19140 0.93281 0.95312 0.91767 1.20022 0.95401 0.96109 0.98816 1.20712 0.97977 0.95870 0.92622 1.20837 0.98183 0.95625 1.01307 1.20674 0.93729 1.00618 0.96504 1.19570 0.93486 0.92521 1.00123 1.98338 1.43120 1.67143 1.96283 0.92768 0.93474 0.93521 0.86947 0.85811 0.78047 0.84987 0.85029 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 12.15 55.43 0.67 -23.14 16 2 C 0.07 1.73 5.18 -17.82 -0.09 1.64 16 3 Si 0.89 20.27 29.55 -169.99 -5.02 15.24 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -13.23 8.35 -34.44 -0.29 -13.52 16 8 H 0.06 1.56 7.70 -52.49 -0.40 1.15 16 9 C 0.11 2.56 2.15 -92.93 -0.20 2.36 16 10 H 0.04 1.07 8.09 -51.92 -0.42 0.65 16 11 C 0.07 1.57 6.00 -3.82 -0.02 1.55 16 12 N -0.86 -15.90 9.32 -10.37 -0.10 -16.00 16 13 C -0.09 -1.97 4.71 -102.66 -0.48 -2.46 16 14 C -0.02 -0.47 11.33 29.24 0.33 -0.14 16 15 O -0.19 -3.82 10.58 3.84 0.04 -3.78 16 16 C 0.05 1.03 7.20 -38.46 -0.28 0.75 16 17 C -0.10 -2.02 6.38 -105.16 -0.67 -2.69 16 18 C -0.05 -0.91 10.10 -39.32 -0.40 -1.31 16 19 C -0.14 -1.97 10.03 -39.59 -0.40 -2.36 16 20 C -0.10 -1.34 9.79 -39.50 -0.39 -1.73 16 21 C -0.03 -0.49 6.33 -39.40 -0.25 -0.74 16 22 Cl -0.08 -1.14 28.96 -51.86 -1.50 -2.64 16 23 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.05 1.01 7.94 -51.93 -0.41 0.59 16 25 H 0.05 1.12 6.83 -51.93 -0.35 0.77 16 26 H 0.32 5.21 9.08 -39.29 -0.36 4.85 16 27 H 0.33 6.03 8.93 -39.29 -0.35 5.68 16 28 H 0.20 3.54 8.06 -52.48 -0.42 3.12 16 29 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -27.56 288.55 -7.82 -35.38 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.13 Total: 9.23 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.13 Total: -18.64 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.58 Total: -39.14 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.56 -7.82 -35.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.628 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds