Wall clock time and date at job start Mon Mar 30 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47052 * 270.00658 * 3 2 1 5 5 H 1.48503 * 109.46580 * 30.00213 * 3 2 1 6 6 H 1.48492 * 109.47265 * 150.00296 * 3 2 1 7 7 C 1.37882 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99886 * 170.59033 * 7 2 1 9 9 C 1.50698 * 119.99486 * 350.58253 * 7 2 1 10 10 H 1.09007 * 109.47145 * 54.56129 * 9 7 2 11 11 C 1.52998 * 109.47492 * 294.56049 * 9 7 2 12 12 N 1.46903 * 109.47334 * 176.80379 * 11 9 7 13 13 C 1.50697 * 109.46904 * 174.55559 * 9 7 2 14 14 C 1.33996 * 126.90693 * 60.11183 * 13 9 7 15 15 O 1.34438 * 110.15660 * 180.25873 * 14 13 9 16 16 C 1.34845 * 110.89174 * 359.76828 * 15 14 13 17 17 C 1.40476 * 107.26469 * 359.97438 * 16 15 14 18 18 C 1.39418 * 120.16191 * 179.97438 * 17 16 15 19 19 C 1.37744 * 119.62734 * 0.02562 * 18 17 16 20 20 C 1.38715 * 120.28657 * 0.02562 * 19 18 17 21 21 C 1.37971 * 120.67423 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.03075 * 179.97438 * 21 20 19 23 23 H 0.96995 * 119.99311 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47176 * 296.80002 * 11 9 7 25 25 H 1.08995 * 109.47137 * 56.79936 * 11 9 7 26 26 H 1.00902 * 111.00011 * 184.52735 * 12 11 9 27 27 H 1.00902 * 110.99936 * 308.47749 * 12 11 9 28 28 H 1.08005 * 124.92428 * 359.97438 * 14 13 9 29 29 H 1.08009 * 120.18493 * 180.02562 * 18 17 16 30 30 H 1.07995 * 119.86065 * 179.97438 * 19 18 17 31 31 H 1.08001 * 119.66376 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0737 -1.2002 -0.1534 9 6 1.2663 -2.4904 0.2124 10 1 0.4571 -2.5712 -0.5134 11 6 0.6866 -2.5206 1.6280 12 7 -0.0972 -3.7497 1.8101 13 6 2.2178 -3.6454 0.0344 14 6 3.3293 -3.8888 0.7421 15 8 3.9268 -5.0074 0.2960 16 6 3.2303 -5.5513 -0.7224 17 6 2.1118 -4.7316 -0.9472 18 6 1.2006 -5.0503 -1.9531 19 6 1.4030 -6.1734 -2.7244 20 6 2.5063 -6.9845 -2.5031 21 6 3.4152 -6.6812 -1.5104 22 17 4.7898 -7.7083 -1.2474 23 1 -0.4849 0.8401 0.0004 24 1 1.4993 -2.4972 2.3541 25 1 0.0426 -1.6537 1.7755 26 1 -0.5513 -3.7588 2.7111 27 1 -0.7688 -3.8639 1.0657 28 1 3.6948 -3.2729 1.5505 29 1 0.3407 -4.4201 -2.1265 30 1 0.6993 -6.4241 -3.5044 31 1 2.6550 -7.8629 -3.1136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:19 Heat of formation + Delta-G solvation = -5.177721 kcal Electronic energy + Delta-G solvation = -17499.774161 eV Core-core repulsion = 14579.200412 eV Total energy + Delta-G solvation = -2920.573748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.27539 -38.89180 -37.55657 -37.22728 -34.20666 -33.42552 -31.18017 -30.81032 -29.03073 -25.86732 -24.27757 -23.49885 -23.14457 -20.59476 -18.69855 -18.21501 -17.76936 -16.98838 -16.82567 -16.56509 -16.02354 -15.57516 -15.21494 -14.92681 -14.60186 -14.04940 -13.90766 -13.55836 -13.31950 -12.99992 -12.86514 -12.55948 -12.46384 -12.24994 -12.05057 -11.82674 -11.59499 -11.41957 -10.51586 -10.44364 -9.54665 -9.36027 -8.86236 -8.17641 -6.26909 -0.09754 0.35688 1.07472 1.40272 1.42890 1.51708 1.64423 1.92103 2.41805 2.71166 3.12079 3.68118 3.78492 4.03575 4.10060 4.31175 4.32261 4.54422 4.66429 4.78569 4.90384 4.98016 5.12295 5.29297 5.40865 5.46793 5.56884 5.71256 5.79071 5.87654 6.15624 6.31489 6.48410 6.71890 6.88139 7.40318 8.88848 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.005633 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.553986 B = 4969.942127 C = 5147.927997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.119 3.881 10 H 0.011 0.989 11 C 0.088 3.912 12 N -0.847 5.847 13 C -0.119 4.119 14 C -0.024 4.024 15 O -0.201 6.201 16 C 0.032 3.968 17 C -0.129 4.129 18 C -0.074 4.074 19 C -0.120 4.120 20 C -0.081 4.081 21 C -0.041 4.041 22 Cl -0.064 7.064 23 H 0.263 0.737 24 H 0.048 0.952 25 H 0.019 0.981 26 H 0.337 0.663 27 H 0.334 0.666 28 H 0.216 0.784 29 H 0.129 0.871 30 H 0.174 0.826 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -12.008 -2.992 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.100 3.900 10 H 0.029 0.971 11 C -0.043 4.043 12 N -0.375 5.375 13 C -0.121 4.121 14 C -0.087 4.087 15 O -0.103 6.103 16 C -0.017 4.017 17 C -0.130 4.130 18 C -0.093 4.093 19 C -0.138 4.138 20 C -0.100 4.100 21 C -0.068 4.068 22 Cl -0.035 7.035 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.233 0.767 29 H 0.147 0.853 30 H 0.192 0.808 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.457 -12.463 -2.916 13.258 hybrid contribution -0.511 1.991 0.332 2.082 sum 2.946 -10.471 -2.585 11.181 Atomic orbital electron populations 1.70046 1.07099 1.27534 1.50433 1.25625 0.95512 1.02027 0.94379 0.85711 0.79082 0.79708 0.78166 1.20541 1.20735 1.19091 1.21360 0.94130 0.91313 1.49949 0.92895 1.17060 0.91665 0.88389 0.92925 0.97059 1.21646 0.95858 0.89178 0.97647 1.58906 1.31619 1.39960 1.07037 1.21508 0.98124 0.96719 0.95715 1.23815 0.94900 0.87837 1.02152 1.83965 1.47593 1.36264 1.42488 1.19512 0.93378 0.96448 0.92313 1.20195 0.96849 0.96203 0.99786 1.20922 0.97840 0.97434 0.93062 1.21308 0.98341 0.93547 1.00594 1.21217 0.92295 1.01206 0.95261 1.19888 0.94559 0.92091 1.00243 1.98341 1.42479 1.66371 1.96300 0.92805 0.93392 0.96297 0.85174 0.85492 0.76733 0.85277 0.80845 0.80637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.07 12.15 21.45 0.26 -49.81 16 2 C 0.02 1.29 5.18 84.66 0.44 1.73 16 3 Si 0.95 41.93 29.55 68.60 2.03 43.96 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.53 -27.85 8.35 25.60 0.21 -27.64 16 8 H 0.05 2.79 7.70 -2.91 -0.02 2.77 16 9 C 0.12 5.71 2.15 -12.29 -0.03 5.68 16 10 H 0.01 0.60 8.09 -2.38 -0.02 0.58 16 11 C 0.09 3.89 6.00 86.30 0.52 4.40 16 12 N -0.85 -31.65 9.32 -186.72 -1.74 -33.39 16 13 C -0.12 -5.20 4.71 -18.59 -0.09 -5.28 16 14 C -0.02 -0.96 11.33 66.85 0.76 -0.20 16 15 O -0.20 -7.92 10.58 -9.19 -0.10 -8.02 16 16 C 0.03 1.19 7.20 22.99 0.17 1.36 16 17 C -0.13 -5.11 6.38 -20.21 -0.13 -5.24 16 18 C -0.07 -2.46 10.10 22.44 0.23 -2.24 16 19 C -0.12 -2.93 10.03 22.27 0.22 -2.71 16 20 C -0.08 -1.96 9.79 22.32 0.22 -1.74 16 21 C -0.04 -1.25 6.33 22.39 0.14 -1.10 16 22 Cl -0.06 -1.73 28.96 -2.72 -0.08 -1.81 16 23 H 0.26 13.79 8.31 -92.71 -0.77 13.01 16 24 H 0.05 2.09 7.94 -2.39 -0.02 2.07 16 25 H 0.02 0.94 6.83 -2.39 -0.02 0.92 16 26 H 0.34 10.79 9.08 -89.69 -0.81 9.97 16 27 H 0.33 12.32 8.93 -89.69 -0.80 11.52 16 28 H 0.22 7.66 8.06 -2.91 -0.02 7.64 16 29 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 30 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -60.23 288.55 2.60 -57.63 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.44 Total: 24.41 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 2.66 Total: -32.97 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.48 Total: -83.20 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.10 Total: -8.02 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -60.23 2.60 -57.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.453 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds