Wall clock time and date at job start Mon Mar 30 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48509 * 109.46740 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47330 * 299.99995 * 3 2 1 6 6 H 1.48499 * 109.47337 * 60.00535 * 3 2 1 7 7 C 1.37883 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99615 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47065 * 299.99964 * 9 7 2 11 11 C 1.52998 * 109.46973 * 60.00158 * 9 7 2 12 12 N 1.46905 * 109.46978 * 184.99742 * 11 9 7 13 13 C 1.50702 * 109.46886 * 179.97438 * 9 7 2 14 14 C 1.33994 * 126.90704 * 300.02569 * 13 9 7 15 15 O 1.34439 * 110.15409 * 179.97438 * 14 13 9 16 16 C 1.34858 * 110.88849 * 359.97438 * 15 14 13 17 17 C 1.40470 * 107.26673 * 359.74515 * 16 15 14 18 18 C 1.39416 * 120.15851 * 179.66048 * 17 16 15 19 19 C 1.37753 * 119.62152 * 0.60769 * 18 17 16 20 20 C 1.38716 * 120.29054 * 359.66963 * 19 18 17 21 21 C 1.37964 * 120.67228 * 0.02607 * 20 19 18 22 22 Cl 1.73605 * 120.03238 * 180.02562 * 21 20 19 23 23 H 0.96996 * 120.00304 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47288 * 64.99642 * 11 9 7 25 25 H 1.08995 * 109.47151 * 304.99702 * 11 9 7 26 26 H 1.00901 * 110.99869 * 180.02562 * 12 11 9 27 27 H 1.00896 * 110.99543 * 303.95346 * 12 11 9 28 28 H 1.07997 * 124.92145 * 359.96230 * 14 13 9 29 29 H 1.07999 * 120.18618 * 180.29866 * 18 17 16 30 30 H 1.08000 * 119.85586 * 179.69628 * 19 18 17 31 31 H 1.07992 * 119.66436 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4524 -3.7951 -1.1906 13 6 2.2303 -3.6446 -0.0018 14 6 3.1600 -3.9074 -0.9303 15 8 3.8497 -5.0117 -0.5955 16 6 3.4029 -5.5230 0.5696 17 6 2.3624 -4.6925 1.0176 18 6 1.6981 -4.9824 2.2086 19 6 2.0764 -6.0805 2.9493 20 6 3.1076 -6.8985 2.5112 21 6 3.7690 -6.6264 1.3314 22 17 5.0567 -7.6616 0.7984 23 1 -0.4850 0.8400 0.0004 24 1 1.0023 -2.6114 -2.1375 25 1 -0.2765 -1.7043 -1.2949 26 1 -1.0428 -3.8717 -2.0053 27 1 0.1231 -4.6168 -1.0830 28 1 3.3303 -3.3177 -1.8189 29 1 0.8949 -4.3469 2.5510 30 1 1.5677 -6.3059 3.8749 31 1 3.3956 -7.7570 3.0996 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259746569.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:21 Heat of formation + Delta-G solvation = 13.200102 kcal Electronic energy + Delta-G solvation = -17523.702036 eV Core-core repulsion = 14603.925210 eV Total energy + Delta-G solvation = -2919.776826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.98775 -37.72511 -36.29182 -35.66975 -32.30300 -31.91737 -29.96668 -29.39880 -27.42807 -23.97659 -23.02593 -22.13937 -21.64152 -19.02921 -17.07385 -16.79091 -16.16181 -15.63955 -15.59132 -14.88187 -14.49169 -14.24118 -13.83538 -13.57357 -12.83118 -12.76166 -12.46700 -11.99676 -11.88849 -11.32358 -11.15616 -11.05712 -10.92526 -10.82975 -10.55736 -10.33317 -9.77017 -9.55568 -8.97746 -8.55645 -8.34504 -7.70427 -7.53265 -6.12081 -4.20867 1.10145 1.54148 2.21988 2.94511 3.18053 3.22731 3.31763 3.35895 3.91326 4.34198 4.91555 5.00832 5.15724 5.23254 5.40298 5.52269 5.68400 5.84797 5.97288 6.16928 6.29678 6.49679 6.56739 6.66438 6.84438 6.86909 7.06481 7.44499 7.61020 7.77762 7.83559 8.11235 8.29836 8.34214 8.83619 9.45003 10.92602 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.005627 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.212464 B = 4974.546293 C = 5150.075334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.111 3.889 10 H 0.047 0.953 11 C 0.068 3.932 12 N -0.852 5.852 13 C -0.112 4.112 14 C -0.027 4.027 15 O -0.194 6.194 16 C 0.053 3.947 17 C -0.107 4.107 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.093 4.093 21 C -0.032 4.032 22 Cl -0.076 7.076 23 H 0.263 0.737 24 H -0.004 1.004 25 H 0.109 0.891 26 H 0.321 0.679 27 H 0.321 0.679 28 H 0.205 0.795 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -11.386 1.738 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.092 3.908 10 H 0.065 0.935 11 C -0.062 4.062 12 N -0.379 5.379 13 C -0.113 4.113 14 C -0.090 4.090 15 O -0.095 6.095 16 C 0.004 3.996 17 C -0.109 4.109 18 C -0.067 4.067 19 C -0.159 4.159 20 C -0.112 4.112 21 C -0.059 4.059 22 Cl -0.047 7.047 23 H 0.073 0.927 24 H 0.015 0.985 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.221 0.779 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.910 -11.118 2.194 11.988 hybrid contribution 1.059 0.697 -0.935 1.575 sum 4.969 -10.421 1.259 11.614 Atomic orbital electron populations 1.69881 1.05791 1.26684 1.49701 1.24981 0.94905 0.99167 0.94741 0.86507 0.80163 0.83513 0.77718 1.19722 1.20914 1.20864 1.21142 0.92988 0.89568 1.51695 0.92265 1.17369 0.89903 0.87784 0.95712 0.93488 1.22133 0.95660 0.92467 0.95892 1.58960 1.27222 1.05686 1.46010 1.22012 1.00139 0.97235 0.91962 1.23748 0.94716 0.88262 1.02285 1.84015 1.53891 1.37843 1.33791 1.19181 0.96756 0.95747 0.87924 1.20051 0.97209 0.96295 0.97308 1.20776 0.98032 0.95911 0.91996 1.20884 0.98364 0.95733 1.00873 1.20714 0.96164 1.00550 0.93752 1.19574 0.96496 0.93134 0.96656 1.98343 1.49474 1.66566 1.90343 0.92739 0.98537 0.87302 0.86858 0.86834 0.77857 0.84621 0.84845 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 2 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.34 8.41 -34.44 -0.29 -13.63 16 8 H 0.06 1.54 7.72 -52.49 -0.41 1.14 16 9 C 0.11 2.63 2.39 -92.92 -0.22 2.41 16 10 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.07 1.53 6.03 -3.82 -0.02 1.51 16 12 N -0.85 -16.55 9.62 -10.37 -0.10 -16.65 16 13 C -0.11 -2.33 4.05 -102.66 -0.42 -2.74 16 14 C -0.03 -0.51 11.33 29.24 0.33 -0.18 16 15 O -0.19 -3.63 10.58 3.80 0.04 -3.59 16 16 C 0.05 0.96 7.20 -38.46 -0.28 0.69 16 17 C -0.11 -2.05 6.38 -105.16 -0.67 -2.72 16 18 C -0.05 -0.82 10.10 -39.32 -0.40 -1.21 16 19 C -0.14 -1.89 10.03 -39.58 -0.40 -2.28 16 20 C -0.09 -1.24 9.79 -39.51 -0.39 -1.63 16 21 C -0.03 -0.50 6.33 -39.41 -0.25 -0.75 16 22 Cl -0.08 -1.07 28.96 -51.86 -1.50 -2.57 16 23 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 24 H 0.00 -0.08 7.89 -51.93 -0.41 -0.49 16 25 H 0.11 2.77 5.95 -51.93 -0.31 2.47 16 26 H 0.32 5.46 9.08 -39.29 -0.36 5.11 16 27 H 0.32 5.96 8.07 -39.29 -0.32 5.64 16 28 H 0.20 3.45 8.06 -52.49 -0.42 3.03 16 29 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -27.59 286.04 -7.78 -35.37 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.05 Total: 10.01 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -3.09 Total: -18.95 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.53 Total: -39.97 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.59 -7.78 -35.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746569.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.574 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds