Wall clock time and date at job start Mon Mar 30 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48509 * 109.46740 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47330 * 299.99995 * 3 2 1 6 6 H 1.48499 * 109.47337 * 60.00535 * 3 2 1 7 7 C 1.37883 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99615 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47065 * 299.99964 * 9 7 2 11 11 C 1.52998 * 109.46973 * 60.00158 * 9 7 2 12 12 N 1.46905 * 109.46978 * 184.99742 * 11 9 7 13 13 C 1.50702 * 109.46886 * 179.97438 * 9 7 2 14 14 C 1.33994 * 126.90704 * 300.02569 * 13 9 7 15 15 O 1.34439 * 110.15409 * 179.97438 * 14 13 9 16 16 C 1.34858 * 110.88849 * 359.97438 * 15 14 13 17 17 C 1.40470 * 107.26673 * 359.74515 * 16 15 14 18 18 C 1.39416 * 120.15851 * 179.66048 * 17 16 15 19 19 C 1.37753 * 119.62152 * 0.60769 * 18 17 16 20 20 C 1.38716 * 120.29054 * 359.66963 * 19 18 17 21 21 C 1.37964 * 120.67228 * 0.02607 * 20 19 18 22 22 Cl 1.73605 * 120.03238 * 180.02562 * 21 20 19 23 23 H 0.96996 * 120.00304 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47288 * 64.99642 * 11 9 7 25 25 H 1.08995 * 109.47151 * 304.99702 * 11 9 7 26 26 H 1.00901 * 110.99869 * 180.02562 * 12 11 9 27 27 H 1.00896 * 110.99543 * 303.95346 * 12 11 9 28 28 H 1.07997 * 124.92145 * 359.96230 * 14 13 9 29 29 H 1.07999 * 120.18618 * 180.29866 * 18 17 16 30 30 H 1.08000 * 119.85586 * 179.69628 * 19 18 17 31 31 H 1.07992 * 119.66436 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4524 -3.7951 -1.1906 13 6 2.2303 -3.6446 -0.0018 14 6 3.1600 -3.9074 -0.9303 15 8 3.8497 -5.0117 -0.5955 16 6 3.4029 -5.5230 0.5696 17 6 2.3624 -4.6925 1.0176 18 6 1.6981 -4.9824 2.2086 19 6 2.0764 -6.0805 2.9493 20 6 3.1076 -6.8985 2.5112 21 6 3.7690 -6.6264 1.3314 22 17 5.0567 -7.6616 0.7984 23 1 -0.4850 0.8400 0.0004 24 1 1.0023 -2.6114 -2.1375 25 1 -0.2765 -1.7043 -1.2949 26 1 -1.0428 -3.8717 -2.0053 27 1 0.1231 -4.6168 -1.0830 28 1 3.3303 -3.3177 -1.8189 29 1 0.8949 -4.3469 2.5510 30 1 1.5677 -6.3059 3.8749 31 1 3.3956 -7.7570 3.0996 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746569.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:21 Heat of formation + Delta-G solvation = -3.363589 kcal Electronic energy + Delta-G solvation = -17524.420291 eV Core-core repulsion = 14603.925210 eV Total energy + Delta-G solvation = -2920.495082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.37611 -38.94395 -37.61293 -37.26759 -34.22068 -33.40131 -31.21893 -30.84055 -29.10464 -25.90237 -24.33669 -23.49806 -23.18422 -20.56808 -18.68187 -18.27744 -17.72407 -17.10109 -16.87502 -16.60180 -16.17634 -15.62300 -15.29279 -15.04081 -14.48898 -14.00281 -13.94080 -13.76218 -13.14346 -12.94295 -12.75164 -12.51560 -12.41135 -12.37323 -12.13821 -11.98231 -11.50873 -11.36046 -10.55712 -10.48774 -9.61073 -9.36099 -8.94654 -8.11480 -6.27289 -0.15622 0.29870 1.04244 1.40094 1.42622 1.49255 1.55626 1.83703 2.42281 2.65401 3.14170 3.61353 3.73440 4.03126 4.07544 4.27390 4.28407 4.52037 4.60703 4.70144 4.84121 5.00605 5.08656 5.25701 5.41913 5.48946 5.53064 5.66711 5.81519 5.95418 6.18640 6.26395 6.54099 6.74125 6.88119 7.41687 8.91892 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.005627 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.212464 B = 4974.546293 C = 5150.075334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.120 3.880 10 H 0.009 0.991 11 C 0.081 3.919 12 N -0.850 5.850 13 C -0.140 4.140 14 C -0.019 4.019 15 O -0.198 6.198 16 C 0.034 3.966 17 C -0.132 4.132 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.078 4.078 21 C -0.040 4.040 22 Cl -0.062 7.062 23 H 0.263 0.737 24 H 0.001 0.999 25 H 0.078 0.922 26 H 0.337 0.663 27 H 0.329 0.671 28 H 0.218 0.782 29 H 0.127 0.873 30 H 0.174 0.826 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -12.942 2.605 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.101 3.899 10 H 0.027 0.973 11 C -0.050 4.050 12 N -0.379 5.379 13 C -0.142 4.142 14 C -0.083 4.083 15 O -0.100 6.100 16 C -0.014 4.014 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.096 4.096 21 C -0.067 4.067 22 Cl -0.033 7.033 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.096 0.904 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.235 0.765 29 H 0.145 0.855 30 H 0.192 0.808 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.837 -12.695 3.055 13.924 hybrid contribution 0.774 1.051 -1.121 1.721 sum 5.612 -11.643 1.934 13.069 Atomic orbital electron populations 1.70008 1.06978 1.27326 1.50432 1.25672 0.95609 1.02095 0.94496 0.85583 0.78972 0.79858 0.77720 1.19488 1.20269 1.20786 1.21407 0.92832 0.90994 1.51504 0.92968 1.17050 0.90048 0.88366 0.94395 0.97311 1.21785 0.95145 0.92466 0.95582 1.58800 1.27054 1.04973 1.47034 1.21743 1.00794 0.97618 0.94000 1.23909 0.93963 0.88240 1.02170 1.83995 1.53901 1.37677 1.34396 1.19500 0.97126 0.96776 0.88037 1.20173 0.98527 0.96419 0.98174 1.20938 0.98464 0.97516 0.92123 1.21329 0.97466 0.93592 1.01212 1.21241 0.94694 1.00992 0.92676 1.19880 0.97126 0.92699 0.97029 1.98348 1.48784 1.65796 1.90369 0.92741 0.98082 0.90379 0.85115 0.85948 0.76529 0.85462 0.80823 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.61 11.29 21.45 0.24 -50.37 16 2 C 0.02 1.12 5.29 84.66 0.45 1.57 16 3 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.53 -28.14 8.41 25.60 0.22 -27.93 16 8 H 0.05 2.78 7.72 -2.91 -0.02 2.76 16 9 C 0.12 5.91 2.39 -12.28 -0.03 5.88 16 10 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 11 C 0.08 3.73 6.03 86.30 0.52 4.25 16 12 N -0.85 -33.39 9.62 -186.71 -1.80 -35.19 16 13 C -0.14 -5.96 4.05 -18.59 -0.08 -6.03 16 14 C -0.02 -0.74 11.33 66.85 0.76 0.01 16 15 O -0.20 -7.36 10.58 -9.33 -0.10 -7.45 16 16 C 0.03 1.21 7.20 22.99 0.17 1.37 16 17 C -0.13 -5.05 6.38 -20.22 -0.13 -5.18 16 18 C -0.07 -2.36 10.10 22.44 0.23 -2.13 16 19 C -0.12 -2.79 10.03 22.27 0.22 -2.57 16 20 C -0.08 -1.77 9.79 22.32 0.22 -1.55 16 21 C -0.04 -1.17 6.33 22.38 0.14 -1.02 16 22 Cl -0.06 -1.59 28.96 -2.72 -0.08 -1.66 16 23 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 24 H 0.00 0.05 7.89 -2.39 -0.02 0.03 16 25 H 0.08 4.12 5.95 -2.39 -0.01 4.11 16 26 H 0.34 11.39 9.08 -89.69 -0.81 10.57 16 27 H 0.33 12.27 8.07 -89.70 -0.72 11.55 16 28 H 0.22 7.39 8.06 -2.91 -0.02 7.37 16 29 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -60.78 286.04 2.62 -58.15 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.36 Total: 25.46 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 2.68 Total: -33.32 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.55 Total: -85.56 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.10 Total: -7.45 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.66 kcal Total: -60.78 2.62 -58.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746569.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.791 kcal (2) G-P(sol) polarization free energy of solvation -60.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds