Wall clock time and date at job start Mon Mar 30 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47465 * 305.00122 * 10 9 7 12 12 N 1.46897 * 109.47150 * 65.00567 * 10 9 7 13 13 C 1.50707 * 109.47009 * 185.00092 * 10 9 7 14 14 C 1.33994 * 126.90706 * 264.69030 * 13 10 9 15 15 O 1.34441 * 110.15443 * 179.82337 * 14 13 10 16 16 C 1.34857 * 110.88931 * 0.46084 * 15 14 13 17 17 C 1.38923 * 133.39434 * 179.73609 * 16 15 14 18 18 C 1.37810 * 119.97365 * 179.97438 * 17 16 15 19 19 C 1.38862 * 120.67981 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.87623 * 179.97438 * 19 18 17 21 21 C 1.37825 * 120.24669 * 359.97438 * 19 18 17 22 22 C 1.39418 * 119.58966 * 0.02562 * 21 19 18 23 23 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.00901 * 110.99977 * 296.03759 * 12 10 9 27 27 H 1.00896 * 111.00712 * 59.99346 * 12 10 9 28 28 H 1.08002 * 124.92223 * 359.96512 * 14 13 10 29 29 H 1.07999 * 120.01265 * 359.96428 * 17 16 15 30 30 H 1.08008 * 119.65690 * 180.02562 * 18 17 16 31 31 H 1.08003 * 120.20285 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 1 3.5870 -3.1755 0.8410 12 7 3.6323 -3.2937 -1.2560 13 6 5.5233 -2.6386 0.1223 14 6 6.4127 -2.7080 -0.8776 15 8 7.6641 -2.6810 -0.3871 16 6 7.6514 -2.6027 0.9592 17 6 8.6517 -2.5526 1.9218 18 6 8.3192 -2.4725 3.2568 19 6 6.9893 -2.4406 3.6550 20 17 6.5941 -2.3402 5.3425 21 6 5.9820 -2.4882 2.7156 22 6 6.3062 -2.5693 1.3621 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 -0.8911 25 1 3.8751 -0.6805 0.8889 26 1 2.6285 -3.3628 -1.3318 27 1 4.0228 -2.8126 -2.0522 28 1 6.1607 -2.7735 -1.9257 29 1 9.6896 -2.5765 1.6241 30 1 9.1011 -2.4335 4.0009 31 1 4.9478 -2.4628 3.0261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259756759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:34 Heat of formation + Delta-G solvation = 11.536552 kcal Electronic energy + Delta-G solvation = -17222.445605 eV Core-core repulsion = 14302.596642 eV Total energy + Delta-G solvation = -2919.848963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.34611 -38.08106 -36.27656 -36.17948 -32.74009 -31.80288 -30.10045 -29.10060 -28.64387 -24.69885 -23.35431 -22.29255 -21.32784 -19.32996 -17.65030 -17.16045 -16.58126 -16.02908 -15.96632 -14.94091 -14.36392 -14.15822 -14.12291 -13.61437 -13.19970 -13.11527 -12.82151 -12.39034 -12.18421 -11.99375 -11.36107 -11.23900 -11.15506 -10.81516 -10.66656 -10.44751 -9.94495 -9.73722 -9.34349 -8.67153 -8.46211 -8.21324 -7.83044 -6.17436 -4.17654 0.89284 1.16670 2.10047 2.54691 2.89792 3.21648 3.30861 3.35242 3.58380 4.34283 4.51231 4.60018 4.95870 5.04612 5.16396 5.27544 5.28671 5.50285 5.66437 5.75981 5.95859 6.14018 6.24656 6.27672 6.36734 6.44504 6.61441 6.98986 7.12415 7.22765 7.61117 7.80569 8.07398 8.35905 8.84601 9.44690 10.95028 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.006307 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.136761 B = 4438.792910 C = 5326.257188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.166 3.834 11 H 0.085 0.915 12 N -0.840 5.840 13 C -0.140 4.140 14 C 0.002 3.998 15 O -0.195 6.195 16 C 0.053 3.947 17 C -0.099 4.099 18 C -0.091 4.091 19 C -0.057 4.057 20 Cl -0.070 7.070 21 C -0.051 4.051 22 C -0.108 4.108 23 H 0.265 0.735 24 H 0.012 0.988 25 H 0.020 0.980 26 H 0.356 0.644 27 H 0.327 0.673 28 H 0.208 0.792 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.404 -4.903 3.780 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.075 4.075 10 C 0.054 3.946 11 H 0.103 0.897 12 N -0.369 5.369 13 C -0.142 4.142 14 C -0.062 4.062 15 O -0.097 6.097 16 C 0.005 3.995 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.083 4.083 20 Cl -0.041 7.041 21 C -0.070 4.070 22 C -0.110 4.110 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.171 0.829 27 H 0.137 0.863 28 H 0.225 0.775 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.817 -5.432 4.069 18.135 hybrid contribution -0.388 1.989 -0.064 2.028 sum 16.429 -3.443 4.005 17.257 Atomic orbital electron populations 1.69903 1.06251 1.27083 1.50244 1.24982 0.94677 0.99124 0.94223 0.86824 0.80492 0.83749 0.78546 1.20314 1.21219 1.19015 1.21019 0.88897 0.94586 1.51992 0.90680 1.20287 0.97589 0.92630 0.96989 1.19710 0.85588 0.95720 0.93553 0.89705 1.59175 1.18069 1.56310 1.03305 1.21417 0.97374 1.05410 0.90031 1.23646 0.79324 1.03688 0.99543 1.84002 1.30605 1.76371 1.18682 1.19660 0.94952 1.02449 0.82392 1.19728 0.97750 1.04752 0.89492 1.20686 0.94630 1.00632 0.95021 1.20570 0.94136 1.08464 0.85175 1.98361 1.94405 1.96880 1.14504 1.20488 0.99774 0.96844 0.89874 1.19695 0.92766 1.04837 0.93668 0.92566 0.97001 0.96128 0.82893 0.86260 0.77521 0.84414 0.84081 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 8 H 0.08 2.12 7.38 -52.49 -0.39 1.73 16 9 C -0.04 -0.82 3.67 -27.88 -0.10 -0.92 16 10 C 0.17 3.16 3.28 -68.86 -0.23 2.93 16 11 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 12 N -0.84 -14.39 8.96 -5.66 -0.05 -14.44 16 13 C -0.14 -2.42 5.47 -102.66 -0.56 -2.98 16 14 C 0.00 0.03 11.27 29.24 0.33 0.36 16 15 O -0.20 -2.94 10.58 3.79 0.04 -2.90 16 16 C 0.05 0.80 7.41 -38.49 -0.29 0.52 16 17 C -0.10 -1.19 10.06 -39.48 -0.40 -1.58 16 18 C -0.09 -1.05 9.79 -39.51 -0.39 -1.44 16 19 C -0.06 -0.77 6.32 -39.50 -0.25 -1.02 16 20 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16 21 C -0.05 -0.80 9.87 -39.29 -0.39 -1.19 16 22 C -0.11 -1.80 6.38 -105.16 -0.67 -2.47 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 26 H 0.36 6.52 7.90 -39.29 -0.31 6.21 16 27 H 0.33 5.03 8.00 -39.29 -0.31 4.71 16 28 H 0.21 2.44 7.34 -52.49 -0.39 2.05 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.14 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -29.68 284.78 -7.49 -37.16 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.02 Total: 7.69 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -3.35 Total: -20.21 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.72 Total: -40.36 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.68 -7.49 -37.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.699 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds