Wall clock time and date at job start Mon Mar 30 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47465 * 305.00122 * 10 9 7 12 12 N 1.46897 * 109.47150 * 65.00567 * 10 9 7 13 13 C 1.50707 * 109.47009 * 185.00092 * 10 9 7 14 14 C 1.33994 * 126.90706 * 264.69030 * 13 10 9 15 15 O 1.34441 * 110.15443 * 179.82337 * 14 13 10 16 16 C 1.34857 * 110.88931 * 0.46084 * 15 14 13 17 17 C 1.38923 * 133.39434 * 179.73609 * 16 15 14 18 18 C 1.37810 * 119.97365 * 179.97438 * 17 16 15 19 19 C 1.38862 * 120.67981 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.87623 * 179.97438 * 19 18 17 21 21 C 1.37825 * 120.24669 * 359.97438 * 19 18 17 22 22 C 1.39418 * 119.58966 * 0.02562 * 21 19 18 23 23 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.00901 * 110.99977 * 296.03759 * 12 10 9 27 27 H 1.00896 * 111.00712 * 59.99346 * 12 10 9 28 28 H 1.08002 * 124.92223 * 359.96512 * 14 13 10 29 29 H 1.07999 * 120.01265 * 359.96428 * 17 16 15 30 30 H 1.08008 * 119.65690 * 180.02562 * 18 17 16 31 31 H 1.08003 * 120.20285 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 1 3.5870 -3.1755 0.8410 12 7 3.6323 -3.2937 -1.2560 13 6 5.5233 -2.6386 0.1223 14 6 6.4127 -2.7080 -0.8776 15 8 7.6641 -2.6810 -0.3871 16 6 7.6514 -2.6027 0.9592 17 6 8.6517 -2.5526 1.9218 18 6 8.3192 -2.4725 3.2568 19 6 6.9893 -2.4406 3.6550 20 17 6.5941 -2.3402 5.3425 21 6 5.9820 -2.4882 2.7156 22 6 6.3062 -2.5693 1.3621 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 -0.8911 25 1 3.8751 -0.6805 0.8889 26 1 2.6285 -3.3628 -1.3318 27 1 4.0228 -2.8126 -2.0522 28 1 6.1607 -2.7735 -1.9257 29 1 9.6896 -2.5765 1.6241 30 1 9.1011 -2.4335 4.0009 31 1 4.9478 -2.4628 3.0261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259756759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:34 Heat of formation + Delta-G solvation = -7.323107 kcal Electronic energy + Delta-G solvation = -17223.263421 eV Core-core repulsion = 14302.596642 eV Total energy + Delta-G solvation = -2920.666779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.48251 -39.12482 -37.79239 -37.23848 -34.70470 -33.09665 -31.18910 -30.63791 -30.07951 -26.39127 -24.44782 -23.36821 -23.03274 -20.66767 -19.25704 -18.48945 -17.97025 -17.15915 -17.07229 -16.53793 -16.13510 -15.35518 -15.29033 -15.05570 -14.87259 -14.24183 -14.18576 -13.83947 -13.68224 -13.46945 -12.93877 -12.55770 -12.36877 -12.27497 -12.18135 -11.89073 -11.79581 -11.38267 -10.98842 -10.81934 -9.59580 -9.52798 -9.11503 -8.34254 -6.37955 -0.16946 0.09215 1.06340 1.27871 1.31930 1.36081 1.42292 1.80827 2.29515 2.50234 3.00684 3.40927 3.47654 3.85214 3.90604 4.19741 4.25234 4.30435 4.33900 4.56714 4.69502 4.78534 5.00335 5.10602 5.13701 5.16146 5.25008 5.41672 5.45172 5.58178 6.05756 6.17616 6.32866 6.66756 6.69344 7.27327 8.81291 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.006307 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.136761 B = 4438.792910 C = 5326.257188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.046 0.954 9 C -0.028 4.028 10 C 0.180 3.820 11 H 0.062 0.938 12 N -0.829 5.829 13 C -0.178 4.178 14 C 0.025 3.975 15 O -0.192 6.192 16 C 0.038 3.962 17 C -0.085 4.085 18 C -0.083 4.083 19 C -0.055 4.055 20 Cl -0.064 7.064 21 C -0.080 4.080 22 C -0.132 4.132 23 H 0.266 0.734 24 H 0.019 0.981 25 H 0.008 0.992 26 H 0.349 0.651 27 H 0.340 0.660 28 H 0.238 0.762 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.704 -4.473 3.597 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.562 4.562 8 H 0.064 0.936 9 C -0.067 4.067 10 C 0.068 3.932 11 H 0.080 0.920 12 N -0.358 5.358 13 C -0.180 4.180 14 C -0.040 4.040 15 O -0.094 6.094 16 C -0.010 4.010 17 C -0.103 4.103 18 C -0.101 4.101 19 C -0.082 4.082 20 Cl -0.035 7.035 21 C -0.099 4.099 22 C -0.134 4.134 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.026 0.974 26 H 0.162 0.838 27 H 0.152 0.848 28 H 0.254 0.746 29 H 0.194 0.806 30 H 0.196 0.804 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.145 -5.012 3.881 21.118 hybrid contribution -1.395 1.764 0.057 2.249 sum 18.750 -3.249 3.937 19.432 Atomic orbital electron populations 1.70039 1.07948 1.28032 1.52249 1.25823 0.95410 1.02849 0.94258 0.85821 0.79222 0.79415 0.79154 1.18938 1.21088 1.18374 1.21307 0.91086 0.93393 1.50461 0.93587 1.20192 0.94734 0.95312 0.96435 1.19323 0.87325 0.93004 0.93570 0.91988 1.59143 1.17463 1.55961 1.03197 1.21229 0.96235 1.08956 0.91597 1.24125 0.78891 1.00707 1.00251 1.84015 1.30299 1.76205 1.18836 1.20054 0.94957 1.03317 0.82627 1.20228 0.98914 1.02351 0.88811 1.21123 0.94363 0.98840 0.95779 1.20762 0.94732 1.07489 0.85188 1.98364 1.94531 1.96778 1.13791 1.20470 0.99718 0.99305 0.90436 1.19876 0.93828 1.05911 0.93802 0.92488 0.96262 0.97402 0.83804 0.84793 0.74621 0.80647 0.80445 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 2 C 0.01 0.83 5.47 84.66 0.46 1.29 16 3 Si 0.94 44.19 27.47 68.60 1.88 46.08 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 7 C -0.52 -28.72 9.11 25.60 0.23 -28.49 16 8 H 0.05 2.73 7.38 -2.91 -0.02 2.70 16 9 C -0.03 -1.26 3.67 29.85 0.11 -1.15 16 10 C 0.18 6.97 3.28 44.17 0.14 7.11 16 11 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 12 N -0.83 -28.29 8.96 -171.80 -1.54 -29.83 16 13 C -0.18 -6.05 5.47 -18.59 -0.10 -6.15 16 14 C 0.02 0.68 11.27 66.85 0.75 1.44 16 15 O -0.19 -5.28 10.58 -9.34 -0.10 -5.38 16 16 C 0.04 1.06 7.41 22.98 0.17 1.23 16 17 C -0.08 -1.72 10.06 22.33 0.22 -1.50 16 18 C -0.08 -1.62 9.79 22.32 0.22 -1.41 16 19 C -0.05 -1.41 6.32 22.32 0.14 -1.27 16 20 Cl -0.06 -1.50 28.95 -2.72 -0.08 -1.58 16 21 C -0.08 -2.53 9.87 22.46 0.22 -2.31 16 22 C -0.13 -4.35 6.38 -20.21 -0.13 -4.48 16 23 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 24 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 25 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 26 H 0.35 13.02 7.90 -89.69 -0.71 12.31 16 27 H 0.34 10.01 8.00 -89.70 -0.72 9.30 16 28 H 0.24 4.82 7.34 -2.91 -0.02 4.80 16 29 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -65.24 284.78 2.62 -62.63 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.30 Total: 21.04 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 2.45 Total: -35.68 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.24 Total: -87.10 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.10 Total: -5.38 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -65.24 2.62 -62.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.303 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds