Wall clock time and date at job start Mon Mar 30 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00061 * 2 1 4 4 H 1.48494 * 109.46746 * 270.00184 * 3 2 1 5 5 H 1.48494 * 109.46735 * 29.99877 * 3 2 1 6 6 H 1.48499 * 109.46943 * 149.99765 * 3 2 1 7 7 C 1.37877 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99907 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47171 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47310 * 55.00460 * 10 9 7 12 12 N 1.46896 * 109.47237 * 295.00436 * 10 9 7 13 13 C 1.50703 * 109.47377 * 174.99844 * 10 9 7 14 14 C 1.33999 * 126.90514 * 99.94304 * 13 10 9 15 15 O 1.34439 * 110.15320 * 180.02562 * 14 13 10 16 16 C 1.34853 * 110.89141 * 0.02562 * 15 14 13 17 17 C 1.38931 * 133.39921 * 180.32763 * 16 15 14 18 18 C 1.37804 * 119.97748 * 180.16310 * 17 16 15 19 19 C 1.38862 * 120.67924 * 359.48313 * 18 17 16 20 20 Cl 1.73598 * 119.87948 * 180.25675 * 19 18 17 21 21 C 1.37822 * 120.24554 * 0.23694 * 19 18 17 22 22 C 1.39423 * 119.59263 * 0.02562 * 21 19 18 23 23 H 0.97002 * 120.00385 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47330 * 60.00573 * 9 7 2 25 25 H 1.08998 * 109.47470 * 300.00512 * 9 7 2 26 26 H 1.00905 * 110.99959 * 176.04638 * 12 10 9 27 27 H 1.00902 * 110.99718 * 299.99570 * 12 10 9 28 28 H 1.08002 * 124.92055 * 0.05562 * 14 13 10 29 29 H 1.07997 * 120.00872 * 359.92385 * 17 16 15 30 30 H 1.08002 * 119.66367 * 179.76924 * 18 17 16 31 31 H 1.08008 * 120.20315 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 1 3.5866 -3.1765 -0.8397 12 7 3.6333 -3.2919 1.2574 13 6 5.5234 -2.6384 -0.1231 14 6 6.4127 -2.7926 0.8674 15 8 7.6640 -2.7383 0.3789 16 6 7.6513 -2.5453 -0.9557 17 6 8.6516 -2.4260 -1.9124 18 6 8.3193 -2.2253 -3.2347 19 6 6.9895 -2.1510 -3.6276 20 17 6.5944 -1.9043 -5.2999 21 6 5.9822 -2.2727 -2.6949 22 6 6.3062 -2.4705 -1.3533 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 3.9024 -4.2644 1.2560 27 1 4.0245 -2.8097 2.0527 28 1 6.1606 -2.9396 1.9072 29 1 9.6893 -2.4866 -1.6194 30 1 9.1010 -2.1295 -3.9737 31 1 4.9481 -2.2143 -3.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259756761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:36 Heat of formation + Delta-G solvation = 17.551964 kcal Electronic energy + Delta-G solvation = -17239.800759 eV Core-core repulsion = 14320.212644 eV Total energy + Delta-G solvation = -2919.588115 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.46674 -38.15742 -36.31823 -36.22315 -32.62015 -31.79448 -30.16136 -29.19567 -28.83133 -24.61428 -23.42933 -22.36190 -21.25775 -19.40762 -17.56695 -17.21152 -16.49212 -16.11046 -16.07790 -15.35338 -14.36965 -14.34188 -14.07243 -13.66282 -13.26069 -13.20256 -12.70160 -12.54522 -12.27069 -11.50347 -11.41898 -11.28957 -11.17072 -10.85720 -10.58120 -10.43938 -9.75767 -9.59814 -9.15156 -8.54604 -8.48373 -8.21698 -8.08406 -5.96197 -3.91782 0.79504 1.08956 2.05122 2.38052 2.77403 3.33086 3.40931 3.43499 3.50405 4.40400 4.49859 4.54950 4.84223 4.96508 5.13240 5.19767 5.31963 5.43122 5.46484 5.66578 5.87687 6.07924 6.11864 6.14105 6.31662 6.35611 6.60629 7.03299 7.09317 7.26638 7.70229 7.86668 7.97939 8.64282 9.15803 9.65929 11.17410 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.006516 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.062378 B = 4295.930658 C = 5267.576845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.496 4.496 8 H 0.081 0.919 9 C 0.002 3.998 10 C 0.171 3.829 11 H 0.088 0.912 12 N -0.818 5.818 13 C -0.180 4.180 14 C -0.015 4.015 15 O -0.193 6.193 16 C 0.054 3.946 17 C -0.100 4.100 18 C -0.088 4.088 19 C -0.057 4.057 20 Cl -0.068 7.068 21 C -0.049 4.049 22 C -0.109 4.109 23 H 0.261 0.739 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.327 0.673 27 H 0.333 0.667 28 H 0.204 0.796 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.152 -5.996 -4.089 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.535 4.535 8 H 0.099 0.901 9 C -0.036 4.036 10 C 0.059 3.941 11 H 0.106 0.894 12 N -0.345 5.345 13 C -0.184 4.184 14 C -0.079 4.079 15 O -0.095 6.095 16 C 0.006 3.994 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.083 4.083 20 Cl -0.039 7.039 21 C -0.068 4.068 22 C -0.111 4.111 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.139 0.861 27 H 0.146 0.854 28 H 0.221 0.779 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.418 -5.698 -4.282 18.820 hybrid contribution 1.271 0.931 0.017 1.575 sum 18.689 -4.768 -4.264 19.753 Atomic orbital electron populations 1.69897 1.06119 1.26534 1.51837 1.24980 0.94666 0.98689 0.95204 0.86929 0.80320 0.84449 0.78440 1.20415 1.21440 1.19367 1.21005 0.88587 0.94639 1.49232 0.90060 1.19599 0.97959 0.89639 0.96396 1.20046 0.82357 0.98900 0.92831 0.89443 1.58724 1.67206 1.05044 1.03480 1.22908 1.00041 1.04802 0.90602 1.23587 0.79862 1.05139 0.99282 1.83987 1.30265 1.75431 1.19782 1.19713 0.95118 1.02013 0.82579 1.19739 0.97769 1.04577 0.89743 1.20710 0.94691 1.00155 0.95144 1.20592 0.94116 1.07861 0.85768 1.98367 1.94387 1.95381 1.15760 1.20531 0.99937 0.96389 0.89928 1.19727 0.92623 1.04752 0.93954 0.92913 0.96668 0.96690 0.86114 0.85376 0.77932 0.84391 0.83988 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.50 -13.90 9.39 -34.44 -0.32 -14.22 16 8 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 9 C 0.00 0.04 3.67 -27.88 -0.10 -0.06 16 10 C 0.17 3.20 3.22 -68.87 -0.22 2.98 16 11 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 12 N -0.82 -13.75 8.65 -5.65 -0.05 -13.80 16 13 C -0.18 -2.92 5.49 -102.66 -0.56 -3.49 16 14 C -0.01 -0.20 11.23 29.24 0.33 0.13 16 15 O -0.19 -2.77 10.58 3.81 0.04 -2.73 16 16 C 0.05 0.78 7.41 -38.49 -0.29 0.49 16 17 C -0.10 -1.16 10.06 -39.48 -0.40 -1.55 16 18 C -0.09 -0.99 9.79 -39.51 -0.39 -1.37 16 19 C -0.06 -0.75 6.32 -39.50 -0.25 -1.00 16 20 Cl -0.07 -0.83 28.95 -51.86 -1.50 -2.33 16 21 C -0.05 -0.75 9.87 -39.29 -0.39 -1.14 16 22 C -0.11 -1.74 6.38 -105.16 -0.67 -2.41 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 25 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 26 H 0.33 4.51 9.06 -39.29 -0.36 4.15 16 27 H 0.33 5.06 8.04 -39.29 -0.32 4.75 16 28 H 0.20 2.11 7.34 -52.49 -0.39 1.72 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 286.49 15.07 4.32 4.32 Total: -1.00 -31.84 286.49 -7.55 -39.39 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.10 Total: 5.02 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.36 Total: -19.86 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.72 Total: -41.04 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.84 -7.55 -39.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.944 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds