Wall clock time and date at job start Mon Mar 30 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00061 * 2 1 4 4 H 1.48494 * 109.46746 * 270.00184 * 3 2 1 5 5 H 1.48494 * 109.46735 * 29.99877 * 3 2 1 6 6 H 1.48499 * 109.46943 * 149.99765 * 3 2 1 7 7 C 1.37877 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99907 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47171 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47310 * 55.00460 * 10 9 7 12 12 N 1.46896 * 109.47237 * 295.00436 * 10 9 7 13 13 C 1.50703 * 109.47377 * 174.99844 * 10 9 7 14 14 C 1.33999 * 126.90514 * 99.94304 * 13 10 9 15 15 O 1.34439 * 110.15320 * 180.02562 * 14 13 10 16 16 C 1.34853 * 110.89141 * 0.02562 * 15 14 13 17 17 C 1.38931 * 133.39921 * 180.32763 * 16 15 14 18 18 C 1.37804 * 119.97748 * 180.16310 * 17 16 15 19 19 C 1.38862 * 120.67924 * 359.48313 * 18 17 16 20 20 Cl 1.73598 * 119.87948 * 180.25675 * 19 18 17 21 21 C 1.37822 * 120.24554 * 0.23694 * 19 18 17 22 22 C 1.39423 * 119.59263 * 0.02562 * 21 19 18 23 23 H 0.97002 * 120.00385 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47330 * 60.00573 * 9 7 2 25 25 H 1.08998 * 109.47470 * 300.00512 * 9 7 2 26 26 H 1.00905 * 110.99959 * 176.04638 * 12 10 9 27 27 H 1.00902 * 110.99718 * 299.99570 * 12 10 9 28 28 H 1.08002 * 124.92055 * 0.05562 * 14 13 10 29 29 H 1.07997 * 120.00872 * 359.92385 * 17 16 15 30 30 H 1.08002 * 119.66367 * 179.76924 * 18 17 16 31 31 H 1.08008 * 120.20315 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 1 3.5866 -3.1765 -0.8397 12 7 3.6333 -3.2919 1.2574 13 6 5.5234 -2.6384 -0.1231 14 6 6.4127 -2.7926 0.8674 15 8 7.6640 -2.7383 0.3789 16 6 7.6513 -2.5453 -0.9557 17 6 8.6516 -2.4260 -1.9124 18 6 8.3193 -2.2253 -3.2347 19 6 6.9895 -2.1510 -3.6276 20 17 6.5944 -1.9043 -5.2999 21 6 5.9822 -2.2727 -2.6949 22 6 6.3062 -2.4705 -1.3533 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 3.9024 -4.2644 1.2560 27 1 4.0245 -2.8097 2.0527 28 1 6.1606 -2.9396 1.9072 29 1 9.6893 -2.4866 -1.6194 30 1 9.1010 -2.1295 -3.9737 31 1 4.9481 -2.2143 -3.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259756761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:36 Heat of formation + Delta-G solvation = -3.624669 kcal Electronic energy + Delta-G solvation = -17240.719047 eV Core-core repulsion = 14320.212644 eV Total energy + Delta-G solvation = -2920.506403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.54912 -39.15984 -37.75800 -37.25810 -34.67030 -33.01415 -31.20487 -30.93702 -30.05442 -26.33752 -24.48900 -23.38723 -22.94967 -20.72906 -19.03259 -18.50766 -17.99227 -17.28746 -17.11057 -16.80309 -16.21543 -15.37662 -15.29874 -15.11350 -14.67389 -14.40564 -14.26566 -13.77997 -13.59457 -13.35045 -12.88280 -12.45950 -12.35817 -12.28834 -12.19273 -11.85004 -11.74641 -11.32145 -10.89708 -10.72696 -9.57799 -9.54553 -9.21024 -8.21681 -6.21596 -0.22064 0.05692 1.04649 1.26219 1.33929 1.34809 1.45447 1.74470 2.37496 2.46855 3.11978 3.37668 3.48737 3.72422 3.90525 4.14404 4.21319 4.23964 4.29193 4.47253 4.68986 4.79447 4.97746 5.08444 5.12127 5.15487 5.24748 5.36705 5.49586 5.68334 6.01285 6.33109 6.47280 6.79152 6.87539 7.39620 8.95420 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.006516 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.062378 B = 4295.930658 C = 5267.576845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.495 4.495 8 H 0.041 0.959 9 C 0.008 3.992 10 C 0.186 3.814 11 H 0.064 0.936 12 N -0.831 5.831 13 C -0.214 4.214 14 C 0.014 3.986 15 O -0.191 6.191 16 C 0.038 3.962 17 C -0.086 4.086 18 C -0.081 4.081 19 C -0.055 4.055 20 Cl -0.063 7.063 21 C -0.079 4.079 22 C -0.132 4.132 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.010 0.990 26 H 0.346 0.654 27 H 0.345 0.655 28 H 0.238 0.762 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.680 -5.592 -3.799 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.193 4.193 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.534 4.534 8 H 0.059 0.941 9 C -0.030 4.030 10 C 0.074 3.926 11 H 0.083 0.917 12 N -0.361 5.361 13 C -0.218 4.218 14 C -0.051 4.051 15 O -0.092 6.092 16 C -0.009 4.009 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.082 4.082 20 Cl -0.034 7.034 21 C -0.098 4.098 22 C -0.134 4.134 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.028 0.972 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.254 0.746 29 H 0.193 0.807 30 H 0.195 0.805 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.974 -5.317 -3.993 22.003 hybrid contribution 0.178 0.701 -0.121 0.733 sum 21.152 -4.616 -4.114 22.037 Atomic orbital electron populations 1.70056 1.08024 1.27600 1.53809 1.25869 0.95472 1.02778 0.95156 0.85834 0.79469 0.79556 0.78793 1.19845 1.21036 1.17581 1.21255 0.91183 0.93021 1.47922 0.94091 1.19465 0.94600 0.93001 0.95943 1.19459 0.84352 0.95814 0.92974 0.91743 1.58591 1.67975 1.06378 1.03127 1.22529 0.98589 1.08564 0.92095 1.24121 0.79208 1.01728 1.00022 1.84006 1.30133 1.75217 1.19850 1.20080 0.95078 1.02902 0.82877 1.20227 0.98936 1.02204 0.89037 1.21130 0.94380 0.98561 0.95884 1.20781 0.94747 1.07002 0.85662 1.98368 1.94524 1.95287 1.15247 1.20499 0.99777 0.98915 0.90614 1.19903 0.93729 1.05666 0.94078 0.92843 0.96397 0.97218 0.84029 0.84128 0.74631 0.80706 0.80465 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.00 0.17 5.47 84.66 0.46 0.64 16 3 Si 0.94 45.53 27.47 68.60 1.88 47.41 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 7 C -0.50 -28.64 9.39 25.60 0.24 -28.40 16 8 H 0.04 2.64 7.99 -2.91 -0.02 2.61 16 9 C 0.01 0.36 3.67 29.85 0.11 0.47 16 10 C 0.19 7.08 3.22 44.17 0.14 7.22 16 11 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 12 N -0.83 -27.67 8.65 -171.80 -1.49 -29.15 16 13 C -0.21 -6.79 5.49 -18.59 -0.10 -6.90 16 14 C 0.01 0.34 11.23 66.85 0.75 1.09 16 15 O -0.19 -4.91 10.58 -9.28 -0.10 -5.01 16 16 C 0.04 1.01 7.41 22.98 0.17 1.18 16 17 C -0.09 -1.66 10.06 22.33 0.22 -1.44 16 18 C -0.08 -1.54 9.79 22.32 0.22 -1.32 16 19 C -0.06 -1.38 6.32 22.32 0.14 -1.23 16 20 Cl -0.06 -1.48 28.95 -2.72 -0.08 -1.55 16 21 C -0.08 -2.42 9.87 22.46 0.22 -2.20 16 22 C -0.13 -4.13 6.38 -20.21 -0.13 -4.26 16 23 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 24 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 25 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 26 H 0.35 9.26 9.06 -89.69 -0.81 8.44 16 27 H 0.34 9.98 8.04 -89.69 -0.72 9.26 16 28 H 0.24 4.04 7.34 -2.91 -0.02 4.02 16 29 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -70.96 286.49 2.56 -68.40 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.41 Total: 15.63 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 2.45 Total: -35.15 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.19 Total: -89.73 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.10 Total: -5.01 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.41 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.55 kcal Total: -70.96 2.56 -68.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.774 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds