Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00147 * 2 1 4 4 H 1.48497 * 109.46908 * 264.68817 * 3 2 1 5 5 H 1.48505 * 109.46964 * 24.68293 * 3 2 1 6 6 H 1.48500 * 109.47353 * 144.68507 * 3 2 1 7 7 C 1.37879 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99919 * 353.70077 * 7 2 1 9 9 C 1.50702 * 120.00220 * 173.70737 * 7 2 1 10 10 H 1.08998 * 109.46829 * 359.49387 * 9 7 2 11 11 C 1.52996 * 109.46883 * 239.49595 * 9 7 2 12 12 N 1.46904 * 109.47579 * 65.37275 * 11 9 7 13 13 C 1.50697 * 109.47312 * 119.49273 * 9 7 2 14 14 C 1.33986 * 124.92335 * 239.71950 * 13 9 7 15 15 C 1.46798 * 106.18246 * 179.89976 * 14 13 9 16 16 C 1.39416 * 134.34538 * 180.02562 * 15 14 13 17 17 C 1.36723 * 119.73104 * 180.31725 * 16 15 14 18 18 C 1.38841 * 120.40650 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.67445 * 180.02562 * 18 17 16 20 20 C 1.37956 * 120.65810 * 0.02562 * 18 17 16 21 21 C 1.38930 * 119.80641 * 0.02562 * 20 18 17 22 22 O 1.34468 * 124.92111 * 60.02402 * 13 9 7 23 23 H 0.97009 * 120.00067 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47060 * 305.37343 * 11 9 7 25 25 H 1.09004 * 109.46926 * 185.37363 * 11 9 7 26 26 H 1.00896 * 111.00224 * 173.85768 * 12 11 9 27 27 H 1.00905 * 110.99761 * 297.82344 * 12 11 9 28 28 H 1.08001 * 126.90656 * 359.97438 * 14 13 9 29 29 H 1.08000 * 120.13430 * 0.29547 * 16 15 14 30 30 H 1.08005 * 119.79540 * 180.02562 * 17 16 15 31 31 H 1.08005 * 120.09701 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6089 1.9816 -1.3941 5 1 1.3949 2.6826 0.5847 6 1 3.4860 1.4753 0.8093 7 6 2.0045 -1.1940 0.0005 8 1 1.4694 -2.1265 0.1036 9 6 3.5047 -1.1981 -0.1425 10 1 3.8628 -0.1735 -0.2428 11 6 3.8963 -1.9992 -1.3858 12 7 3.4010 -1.3131 -2.5866 13 6 4.1240 -1.8295 1.0776 14 6 4.9858 -1.2201 1.9029 15 6 5.3206 -2.2013 2.9422 16 6 6.1442 -2.1870 4.0669 17 6 6.2428 -3.3038 4.8494 18 6 5.5278 -4.4505 4.5308 19 17 5.6666 -5.8576 5.5379 20 6 4.7079 -4.4828 3.4217 21 6 4.5951 -3.3585 2.6134 22 8 3.8963 -3.0881 1.4926 23 1 -0.4851 0.8401 -0.0004 24 1 3.4572 -2.9952 -1.3293 25 1 4.9819 -2.0830 -1.4369 26 1 3.7313 -1.7673 -3.4248 27 1 2.3937 -1.2543 -2.5799 28 1 5.3583 -0.2096 1.8208 29 1 6.7024 -1.2974 4.3189 30 1 6.8803 -3.2937 5.7212 31 1 4.1555 -5.3795 3.1825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259756829.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = -5.826065 kcal Electronic energy + Delta-G solvation = -17250.407208 eV Core-core repulsion = 14329.805345 eV Total energy + Delta-G solvation = -2920.601863 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.42785 -39.23455 -37.43748 -37.06005 -34.31575 -33.75710 -31.78654 -31.52757 -28.92341 -26.28798 -24.21930 -23.49056 -22.41295 -21.41341 -19.28418 -18.53513 -17.66173 -17.17179 -17.03853 -16.43035 -16.12781 -15.68037 -15.19492 -14.84224 -14.67211 -14.26559 -14.11234 -13.94520 -13.56314 -13.39368 -12.93823 -12.58779 -12.37347 -12.35101 -12.00394 -11.88266 -11.83248 -11.42674 -10.82683 -10.78752 -9.67460 -9.48724 -8.98866 -8.35360 -6.43446 -0.19674 0.24634 0.90183 1.37656 1.40358 1.46484 1.47523 1.95580 2.33336 2.57436 3.01388 3.45209 3.68388 3.93980 3.98858 4.04197 4.24783 4.35229 4.42682 4.63502 4.70472 4.75488 4.82799 5.00757 5.05880 5.16729 5.29355 5.42483 5.48134 5.62259 6.12236 6.30612 6.34969 6.60710 6.83184 7.23691 8.79841 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.005058 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.363846 B = 5534.452906 C = 5698.627314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.035 3.965 3 Si 0.936 3.064 4 H -0.252 1.252 5 H -0.291 1.291 6 H -0.248 1.248 7 C -0.513 4.513 8 H 0.029 0.971 9 C 0.078 3.922 10 H 0.081 0.919 11 C 0.083 3.917 12 N -0.846 5.846 13 C 0.077 3.923 14 C -0.251 4.251 15 C -0.129 4.129 16 C -0.062 4.062 17 C -0.120 4.120 18 C -0.020 4.020 19 Cl -0.050 7.050 20 C -0.107 4.107 21 C 0.021 3.979 22 O -0.205 6.205 23 H 0.270 0.730 24 H 0.010 0.990 25 H 0.071 0.929 26 H 0.346 0.654 27 H 0.345 0.655 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.575 -5.147 7.159 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.165 4.165 3 Si 0.760 3.240 4 H -0.177 1.177 5 H -0.218 1.218 6 H -0.172 1.172 7 C -0.550 4.550 8 H 0.048 0.952 9 C 0.058 3.942 10 H 0.099 0.901 11 C -0.049 4.049 12 N -0.376 5.376 13 C 0.028 3.972 14 C -0.270 4.270 15 C -0.130 4.130 16 C -0.080 4.080 17 C -0.138 4.138 18 C -0.047 4.047 19 Cl -0.021 7.021 20 C -0.127 4.127 21 C -0.027 4.027 22 O -0.107 6.107 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.089 0.911 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.187 0.813 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.652 -4.746 7.377 17.077 hybrid contribution -1.004 -0.404 -0.189 1.099 sum 13.648 -5.150 7.187 16.262 Atomic orbital electron populations 1.70025 1.08250 1.28497 1.50440 1.25840 0.95317 1.02563 0.92818 0.85880 0.79181 0.78638 0.80328 1.17671 1.21792 1.17228 1.20781 0.89762 0.93292 1.51166 0.95227 1.18195 0.94193 0.95696 0.86080 0.90109 1.21638 0.98209 0.94163 0.90841 1.58593 1.17136 1.58112 1.03780 1.23645 0.93752 0.80915 0.98873 1.22404 1.05566 1.01656 0.97362 1.20324 1.00670 0.93540 0.98449 1.20546 0.96496 0.99657 0.91299 1.20941 1.00665 0.90474 1.01745 1.20448 1.00323 0.90423 0.93491 1.98363 1.97062 1.39493 1.67170 1.19757 1.02161 0.96702 0.94031 1.19833 0.96377 0.97162 0.89310 1.83994 1.58672 1.31352 1.36678 0.92121 0.97214 0.91105 0.84154 0.84183 0.81328 0.81712 0.81188 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.96 21.45 0.30 -55.45 16 2 C 0.03 1.91 5.47 84.66 0.46 2.38 16 3 Si 0.94 42.17 26.96 68.60 1.85 44.02 16 4 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.35 6.77 99.48 0.67 -9.68 16 7 C -0.51 -27.98 7.99 25.60 0.20 -27.78 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.08 3.50 2.34 -12.29 -0.03 3.47 16 10 H 0.08 3.57 4.69 -2.39 -0.01 3.56 16 11 C 0.08 3.26 6.19 86.30 0.53 3.80 16 12 N -0.85 -30.87 9.57 -186.72 -1.79 -32.66 16 13 C 0.08 3.33 5.72 24.72 0.14 3.48 16 14 C -0.25 -9.46 10.97 23.54 0.26 -9.21 16 15 C -0.13 -4.41 6.40 -20.21 -0.13 -4.54 16 16 C -0.06 -1.56 10.05 22.20 0.22 -1.34 16 17 C -0.12 -2.65 9.75 22.06 0.22 -2.43 16 18 C -0.02 -0.51 6.31 22.35 0.14 -0.37 16 19 Cl -0.05 -1.05 28.93 -2.72 -0.08 -1.13 16 20 C -0.11 -3.30 9.84 22.37 0.22 -3.08 16 21 C 0.02 0.77 7.42 22.98 0.17 0.95 16 22 O -0.21 -9.08 10.58 -9.16 -0.10 -9.18 16 23 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.35 10.01 9.08 -89.70 -0.81 9.19 16 27 H 0.34 14.06 8.25 -89.69 -0.74 13.32 16 28 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 29 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -63.49 286.34 2.19 -61.30 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.41 Total: 27.79 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 2.41 Total: -34.68 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.49 Total: -88.11 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.10 Total: -9.18 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.85 Total: 44.02 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -63.49 2.19 -61.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756829.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.471 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds