Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00035 * 2 1 4 4 H 1.48502 * 109.46948 * 269.99453 * 3 2 1 5 5 H 1.48501 * 109.47264 * 29.99590 * 3 2 1 6 6 H 1.48500 * 109.46676 * 149.99770 * 3 2 1 7 7 C 1.37877 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46908 * 299.99261 * 9 7 2 11 11 C 1.52998 * 109.47179 * 59.99591 * 9 7 2 12 12 N 1.46902 * 109.46775 * 184.99754 * 11 9 7 13 13 C 1.50703 * 109.46877 * 179.97438 * 9 7 2 14 14 C 1.33978 * 124.92407 * 119.99787 * 13 9 7 15 15 C 1.46804 * 106.18922 * 179.97438 * 14 13 9 16 16 C 1.39407 * 134.35108 * 179.97438 * 15 14 13 17 17 C 1.36724 * 119.73171 * 180.02562 * 16 15 14 18 18 C 1.38847 * 120.40196 * 0.25497 * 17 16 15 19 19 Cl 1.73599 * 119.66930 * 179.74477 * 18 17 16 20 20 C 1.37952 * 120.66076 * 359.48476 * 18 17 16 21 21 C 1.38936 * 119.80366 * 0.51078 * 20 18 17 22 22 O 1.34466 * 124.92000 * 299.99419 * 13 9 7 23 23 H 0.97004 * 120.00094 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46948 * 304.99806 * 11 9 7 25 25 H 1.09002 * 109.46741 * 65.00500 * 11 9 7 26 26 H 1.00906 * 110.99693 * 179.97438 * 12 11 9 27 27 H 1.00896 * 111.00224 * 303.95848 * 12 11 9 28 28 H 1.08001 * 126.91038 * 0.02562 * 14 13 9 29 29 H 1.08000 * 120.13143 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.79420 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.09880 * 180.27958 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5805 -1.2490 12 7 -0.4516 -3.7957 -1.1901 13 6 2.2302 -3.6447 0.0005 14 6 2.3112 -4.5845 0.9519 15 6 3.3934 -5.4884 0.5432 16 6 3.9615 -6.6382 1.0898 17 6 4.9891 -7.2621 0.4386 18 6 5.4728 -6.7545 -0.7598 19 17 6.7828 -7.5582 -1.5671 20 6 4.9194 -5.6209 -1.3180 21 6 3.8744 -4.9724 -0.6717 22 8 3.1493 -3.8715 -0.9544 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2757 -1.7048 -1.2952 25 1 1.0037 -2.6125 -2.1364 26 1 -1.0421 -3.8721 -2.0048 27 1 0.1237 -4.6174 -1.0817 28 1 1.7022 -4.6622 1.8404 29 1 3.5913 -7.0344 2.0238 30 1 5.4302 -8.1527 0.8614 31 1 5.2998 -5.2364 -2.2528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259756833.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = 11.703097 kcal Electronic energy + Delta-G solvation = -17256.254321 eV Core-core repulsion = 14336.412580 eV Total energy + Delta-G solvation = -2919.841741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.03415 -38.03851 -36.28010 -35.34890 -32.39695 -32.22141 -30.32541 -29.89166 -27.34082 -24.12322 -22.97417 -22.24475 -21.03687 -19.90805 -17.23046 -16.93310 -16.14340 -15.65508 -15.50469 -14.92135 -14.47432 -13.98510 -13.80733 -13.70837 -13.12105 -13.08563 -12.42180 -12.06694 -12.02247 -11.35750 -11.25255 -11.23360 -10.92250 -10.82778 -10.75806 -10.44810 -9.88709 -9.76736 -9.30823 -8.64662 -8.44890 -7.81689 -7.58670 -6.20798 -4.30937 1.03929 1.43820 2.01517 2.91591 3.21982 3.29082 3.33283 3.34742 3.78497 4.29049 4.72947 4.94245 5.06957 5.13424 5.26626 5.44670 5.58924 5.74167 5.96914 6.08397 6.18385 6.33755 6.46520 6.57673 6.61622 6.73015 6.94588 7.24260 7.46998 7.69551 7.78549 7.96920 8.15425 8.23095 8.71457 9.35294 10.83749 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.004936 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.764451 B = 5670.696747 C = 6129.605684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.114 3.886 10 H 0.074 0.926 11 C 0.062 3.938 12 N -0.853 5.853 13 C 0.115 3.885 14 C -0.254 4.254 15 C -0.109 4.109 16 C -0.069 4.069 17 C -0.131 4.131 18 C -0.028 4.028 19 Cl -0.073 7.073 20 C -0.093 4.093 21 C 0.045 3.955 22 O -0.182 6.182 23 H 0.266 0.734 24 H 0.116 0.884 25 H 0.005 0.995 26 H 0.325 0.675 27 H 0.321 0.679 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -12.018 -1.012 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.095 3.905 10 H 0.092 0.908 11 C -0.067 4.067 12 N -0.380 5.380 13 C 0.067 3.933 14 C -0.273 4.273 15 C -0.110 4.110 16 C -0.087 4.087 17 C -0.150 4.150 18 C -0.055 4.055 19 Cl -0.044 7.044 20 C -0.113 4.113 21 C -0.003 4.003 22 O -0.082 6.082 23 H 0.076 0.924 24 H 0.133 0.867 25 H 0.023 0.977 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.173 0.827 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.486 -11.454 -0.658 13.179 hybrid contribution 1.138 0.456 -0.848 1.491 sum 7.624 -10.998 -1.506 13.466 Atomic orbital electron populations 1.69861 1.05815 1.27204 1.49039 1.24952 0.94981 0.99336 0.94289 0.86444 0.79860 0.82596 0.78343 1.20424 1.20904 1.19709 1.20946 0.93239 0.89147 1.52772 0.91973 1.17959 0.88417 0.86952 0.97172 0.90784 1.22138 0.95732 0.92933 0.95942 1.58971 1.27171 1.05520 1.46343 1.23881 0.88304 0.96174 0.84972 1.22161 1.03374 0.97839 1.03902 1.20155 0.98138 0.97141 0.95571 1.20144 0.95291 0.93673 0.99617 1.20499 0.98501 1.01445 0.94519 1.20223 0.93944 0.95765 0.95574 1.98347 1.47497 1.79022 1.79535 1.19535 0.95564 0.94978 1.01176 1.19376 0.95967 0.89152 0.95822 1.84111 1.40560 1.38150 1.45383 0.92393 0.86660 0.97673 0.86422 0.86831 0.82727 0.84965 0.84932 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.65 11.29 55.43 0.63 -23.02 16 2 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.77 8.55 -34.44 -0.29 -14.07 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.11 2.72 2.37 -92.92 -0.22 2.50 16 10 H 0.07 1.90 8.08 -51.93 -0.42 1.48 16 11 C 0.06 1.42 6.07 -3.82 -0.02 1.40 16 12 N -0.85 -16.53 9.62 -10.37 -0.10 -16.62 16 13 C 0.11 2.46 4.70 -35.80 -0.17 2.30 16 14 C -0.25 -4.82 10.97 -37.62 -0.41 -5.23 16 15 C -0.11 -1.90 6.40 -105.15 -0.67 -2.57 16 16 C -0.07 -0.97 10.05 -39.69 -0.40 -1.37 16 17 C -0.13 -1.68 9.75 -39.90 -0.39 -2.07 16 18 C -0.03 -0.39 6.31 -39.46 -0.25 -0.64 16 19 Cl -0.07 -0.86 28.93 -51.86 -1.50 -2.36 16 20 C -0.09 -1.45 9.84 -39.43 -0.39 -1.84 16 21 C 0.05 0.83 7.42 -38.48 -0.29 0.55 16 22 O -0.18 -3.86 10.58 3.85 0.04 -3.82 16 23 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.12 2.92 5.95 -51.93 -0.31 2.62 16 25 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 26 H 0.33 5.50 9.08 -39.29 -0.36 5.14 16 27 H 0.32 5.92 8.07 -39.29 -0.32 5.60 16 28 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -26.82 286.61 -8.29 -35.11 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.06 Total: 10.33 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.60 Total: -19.37 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.53 Total: -39.65 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.82 -8.29 -35.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756833.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.809 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds