Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00035 * 2 1 4 4 H 1.48502 * 109.46948 * 269.99453 * 3 2 1 5 5 H 1.48501 * 109.47264 * 29.99590 * 3 2 1 6 6 H 1.48500 * 109.46676 * 149.99770 * 3 2 1 7 7 C 1.37877 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46908 * 299.99261 * 9 7 2 11 11 C 1.52998 * 109.47179 * 59.99591 * 9 7 2 12 12 N 1.46902 * 109.46775 * 184.99754 * 11 9 7 13 13 C 1.50703 * 109.46877 * 179.97438 * 9 7 2 14 14 C 1.33978 * 124.92407 * 119.99787 * 13 9 7 15 15 C 1.46804 * 106.18922 * 179.97438 * 14 13 9 16 16 C 1.39407 * 134.35108 * 179.97438 * 15 14 13 17 17 C 1.36724 * 119.73171 * 180.02562 * 16 15 14 18 18 C 1.38847 * 120.40196 * 0.25497 * 17 16 15 19 19 Cl 1.73599 * 119.66930 * 179.74477 * 18 17 16 20 20 C 1.37952 * 120.66076 * 359.48476 * 18 17 16 21 21 C 1.38936 * 119.80366 * 0.51078 * 20 18 17 22 22 O 1.34466 * 124.92000 * 299.99419 * 13 9 7 23 23 H 0.97004 * 120.00094 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46948 * 304.99806 * 11 9 7 25 25 H 1.09002 * 109.46741 * 65.00500 * 11 9 7 26 26 H 1.00906 * 110.99693 * 179.97438 * 12 11 9 27 27 H 1.00896 * 111.00224 * 303.95848 * 12 11 9 28 28 H 1.08001 * 126.91038 * 0.02562 * 14 13 9 29 29 H 1.08000 * 120.13143 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.79420 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.09880 * 180.27958 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5805 -1.2490 12 7 -0.4516 -3.7957 -1.1901 13 6 2.2302 -3.6447 0.0005 14 6 2.3112 -4.5845 0.9519 15 6 3.3934 -5.4884 0.5432 16 6 3.9615 -6.6382 1.0898 17 6 4.9891 -7.2621 0.4386 18 6 5.4728 -6.7545 -0.7598 19 17 6.7828 -7.5582 -1.5671 20 6 4.9194 -5.6209 -1.3180 21 6 3.8744 -4.9724 -0.6717 22 8 3.1493 -3.8715 -0.9544 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2757 -1.7048 -1.2952 25 1 1.0037 -2.6125 -2.1364 26 1 -1.0421 -3.8721 -2.0048 27 1 0.1237 -4.6174 -1.0817 28 1 1.7022 -4.6622 1.8404 29 1 3.5913 -7.0344 2.0238 30 1 5.4302 -8.1527 0.8614 31 1 5.2998 -5.2364 -2.2528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259756833.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = -4.000393 kcal Electronic energy + Delta-G solvation = -17256.935275 eV Core-core repulsion = 14336.412580 eV Total energy + Delta-G solvation = -2920.522696 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.44536 -39.23877 -37.43599 -37.04400 -34.28110 -33.63841 -31.56031 -31.45281 -28.90345 -26.02304 -24.30336 -23.64898 -22.44995 -21.50628 -18.77842 -18.52500 -17.47290 -17.24087 -17.00328 -16.50835 -16.14939 -15.52381 -15.22199 -15.08545 -14.51483 -14.22642 -13.94230 -13.91311 -13.24750 -13.16100 -12.76420 -12.59987 -12.44380 -12.35640 -12.25524 -11.95275 -11.63362 -11.52071 -10.80300 -10.63690 -9.67236 -9.48604 -8.99118 -8.19729 -6.37316 -0.19370 0.24826 0.90469 1.38860 1.40618 1.45628 1.53306 1.96477 2.38878 2.58121 3.06053 3.49052 3.71709 3.95735 3.98628 4.05135 4.27903 4.38091 4.62879 4.69519 4.74190 4.85136 5.02750 5.13065 5.26576 5.30470 5.45036 5.54465 5.66937 5.75158 6.06985 6.27448 6.42231 6.62238 6.76129 7.31685 8.83363 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.004936 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.764451 B = 5670.696747 C = 6129.605684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.047 0.953 9 C 0.118 3.882 10 H 0.050 0.950 11 C 0.077 3.923 12 N -0.846 5.846 13 C 0.078 3.922 14 C -0.238 4.238 15 C -0.128 4.128 16 C -0.060 4.060 17 C -0.120 4.120 18 C -0.019 4.019 19 Cl -0.050 7.050 20 C -0.107 4.107 21 C 0.021 3.979 22 O -0.207 6.207 23 H 0.268 0.732 24 H 0.089 0.911 25 H -0.007 1.007 26 H 0.341 0.659 27 H 0.330 0.670 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 -14.001 -0.483 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.065 0.935 9 C 0.099 3.901 10 H 0.068 0.932 11 C -0.054 4.054 12 N -0.375 5.375 13 C 0.030 3.970 14 C -0.257 4.257 15 C -0.129 4.129 16 C -0.078 4.078 17 C -0.138 4.138 18 C -0.046 4.046 19 Cl -0.021 7.021 20 C -0.127 4.127 21 C -0.026 4.026 22 O -0.109 6.109 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.011 0.989 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.185 0.815 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.959 -13.458 -0.135 15.636 hybrid contribution 0.809 0.873 -1.027 1.572 sum 8.767 -12.585 -1.162 15.382 Atomic orbital electron populations 1.69963 1.06826 1.27946 1.49374 1.25637 0.95749 1.02132 0.93867 0.85554 0.78630 0.79092 0.78423 1.19964 1.20024 1.19799 1.21161 0.92768 0.90939 1.53183 0.93477 1.17610 0.88867 0.87364 0.96269 0.93244 1.21771 0.95109 0.93310 0.95168 1.58830 1.26773 1.04674 1.47251 1.23334 0.89793 0.97059 0.86813 1.22380 1.03154 0.97102 1.03066 1.20309 0.98337 0.98530 0.95721 1.20544 0.94739 0.91999 1.00499 1.20944 0.97405 1.01951 0.93539 1.20448 0.93686 0.94776 0.95670 1.98365 1.46228 1.78294 1.79214 1.19745 0.95350 0.95754 1.01807 1.19824 0.96853 0.88895 0.97070 1.84006 1.41243 1.39827 1.45836 0.92217 0.89282 0.98868 0.84692 0.85888 0.81477 0.81731 0.81203 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.76 11.29 21.45 0.24 -49.52 16 2 C 0.03 1.45 5.29 84.65 0.45 1.90 16 3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.54 -29.77 8.55 25.60 0.22 -29.55 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.12 5.89 2.37 -12.28 -0.03 5.86 16 10 H 0.05 2.67 8.08 -2.39 -0.02 2.65 16 11 C 0.08 3.67 6.07 86.30 0.52 4.19 16 12 N -0.85 -33.33 9.62 -186.72 -1.80 -35.13 16 13 C 0.08 3.44 4.70 24.72 0.12 3.56 16 14 C -0.24 -9.06 10.97 23.54 0.26 -8.80 16 15 C -0.13 -4.30 6.40 -20.21 -0.13 -4.43 16 16 C -0.06 -1.47 10.05 22.20 0.22 -1.25 16 17 C -0.12 -2.57 9.75 22.06 0.22 -2.35 16 18 C -0.02 -0.47 6.31 22.35 0.14 -0.32 16 19 Cl -0.05 -1.02 28.93 -2.72 -0.08 -1.10 16 20 C -0.11 -3.21 9.84 22.37 0.22 -2.99 16 21 C 0.02 0.77 7.42 22.98 0.17 0.94 16 22 O -0.21 -9.14 10.58 -9.15 -0.10 -9.23 16 23 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 24 H 0.09 4.72 5.95 -2.39 -0.01 4.70 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.34 11.54 9.08 -89.69 -0.81 10.73 16 27 H 0.33 12.27 8.07 -89.70 -0.72 11.55 16 28 H 0.17 5.70 8.06 -2.91 -0.02 5.68 16 29 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -59.55 286.61 2.32 -57.23 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.36 Total: 26.28 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 2.38 Total: -33.25 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.55 Total: -84.64 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.10 Total: -9.23 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -59.55 2.32 -57.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756833.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.232 kcal (2) G-P(sol) polarization free energy of solvation -59.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds