Wall clock time and date at job start Mon Mar 30 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37987 * 119.92086 * 2 1 4 4 C 1.38242 * 120.39000 * 179.97438 * 3 2 1 5 5 C 1.38558 * 119.81022 * 0.30713 * 4 3 2 6 6 Cl 1.73597 * 120.05614 * 179.71482 * 5 4 3 7 7 C 1.37754 * 119.88386 * 359.42103 * 5 4 3 8 8 C 1.38921 * 120.80067 * 0.55985 * 7 5 4 9 9 N 1.39527 * 110.21904 * 179.72545 * 8 7 5 10 10 C 1.34371 * 112.25343 * 359.97438 * 9 8 7 11 11 O 1.21290 * 126.43887 * 180.02562 * 10 9 8 12 12 C 1.51132 * 132.85433 * 180.19713 * 7 5 4 13 13 C 1.52999 * 110.51014 * 298.96981 * 12 7 5 14 14 C 1.50701 * 110.51325 * 61.67498 * 12 7 5 15 15 H 1.08000 * 119.99874 * 0.02562 * 14 12 7 16 16 C 1.37878 * 120.00316 * 179.97438 * 14 12 7 17 17 N 1.31513 * 119.99571 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 120.00116 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47174 * 90.00153 * 18 16 14 20 20 H 1.48501 * 109.47299 * 210.00365 * 18 16 14 21 21 H 1.48498 * 109.47241 * 330.00148 * 18 16 14 22 22 H 1.08992 * 109.47551 * 89.99598 * 1 2 3 23 23 H 1.09003 * 109.46896 * 209.99828 * 1 2 3 24 24 H 1.09003 * 109.47210 * 329.99302 * 1 2 3 25 25 H 1.08004 * 119.80646 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.09199 * 180.02562 * 4 3 2 27 27 H 0.97001 * 123.87284 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47175 * 60.00232 * 13 12 7 29 29 H 1.09007 * 109.47302 * 180.02562 * 13 12 7 30 30 H 1.09003 * 109.47137 * 299.99739 * 13 12 7 31 31 H 0.97002 * 120.00151 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1960 0.0000 4 6 3.5776 1.2073 0.0005 5 6 4.2763 0.0107 -0.0054 6 17 6.0122 0.0175 -0.0122 7 6 3.5910 -1.1842 0.0003 8 6 2.2019 -1.2076 0.0003 9 7 1.7419 -2.5249 0.0003 10 6 2.7482 -3.4154 -0.0002 11 8 2.6410 -4.6235 -0.0007 12 6 4.0407 -2.6271 0.0003 13 6 4.8560 -2.9344 -1.2573 14 6 4.8438 -2.9299 1.2390 15 1 5.0207 -2.1554 1.9706 16 6 5.3521 -4.1959 1.4387 17 7 5.1363 -5.1391 0.5479 18 14 6.3470 -4.5714 2.9743 19 1 5.4374 -5.0361 4.0522 20 1 7.3407 -5.6331 2.6731 21 1 7.0541 -3.3435 3.4186 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6508 2.1287 0.0004 26 1 4.1115 2.1461 0.0009 27 1 0.8033 -2.7697 0.0000 28 1 5.7345 -2.2899 -1.2873 29 1 5.1709 -3.9779 -1.2402 30 1 4.2431 -2.7547 -2.1406 31 1 5.4942 -6.0297 0.6882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:51 Heat of formation + Delta-G solvation = -8.497040 kcal Electronic energy + Delta-G solvation = -18254.224115 eV Core-core repulsion = 15333.506430 eV Total energy + Delta-G solvation = -2920.717685 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73455 -37.65596 -35.88333 -34.69735 -33.89942 -32.17942 -30.33128 -28.22617 -26.31020 -25.36127 -23.74756 -21.69187 -20.44750 -19.16861 -17.32851 -16.20949 -15.70524 -15.33236 -14.53617 -14.34508 -14.25302 -13.59589 -13.33222 -12.96258 -12.82486 -12.47381 -12.37459 -11.86040 -11.41960 -11.21639 -11.10403 -10.89830 -10.88109 -10.68882 -10.34530 -10.13862 -9.84974 -9.69039 -9.47008 -8.62034 -8.34241 -7.95111 -7.31711 -5.98762 -4.13247 1.60557 1.78283 2.82520 3.30361 3.37281 3.40399 3.70978 3.86611 4.27982 4.41665 5.01135 5.16325 5.23141 5.32134 5.52207 5.67626 5.70867 5.90879 5.97588 6.04740 6.20863 6.58121 6.70231 6.75739 6.78406 6.94141 7.10284 7.27653 7.62588 7.74210 7.79388 7.97772 8.18657 8.82707 9.31972 9.50049 10.99711 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.009656 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.568712 B = 2899.194331 C = 3718.758342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.148 4.148 5 C 0.015 3.985 6 Cl -0.065 7.065 7 C -0.092 4.092 8 C 0.164 3.836 9 N -0.679 5.679 10 C 0.527 3.473 11 O -0.470 6.470 12 C 0.093 3.907 13 C -0.123 4.123 14 C -0.511 4.511 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.840 5.840 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.284 1.284 21 H -0.271 1.271 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.391 0.609 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.010 0.990 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 11.393 -2.215 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.131 4.131 3 C -0.111 4.111 4 C -0.168 4.168 5 C -0.012 4.012 6 Cl -0.036 7.036 7 C -0.095 4.095 8 C 0.064 3.936 9 N -0.324 5.324 10 C 0.316 3.684 11 O -0.339 6.339 12 C 0.089 3.911 13 C -0.181 4.181 14 C -0.548 4.548 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.474 5.474 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.227 0.773 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.029 0.971 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.062 10.338 -2.273 11.733 hybrid contribution 0.039 -0.280 0.943 0.984 sum -5.023 10.058 -1.331 11.321 Atomic orbital electron populations 1.20626 0.91417 1.02340 1.01815 1.19139 0.95605 0.90597 1.07734 1.20431 0.93137 0.96420 1.01120 1.20784 0.93933 0.96199 1.05885 1.19952 0.84673 0.92894 1.03701 1.98342 1.09746 1.98802 1.96673 1.20255 0.92227 0.96704 1.00349 1.17890 0.92725 0.84927 0.98020 1.44418 1.09948 1.04912 1.73090 1.22011 0.86374 0.86965 0.73032 1.90693 1.85020 1.11949 1.46240 1.17734 0.91320 0.83498 0.98505 1.21685 0.98236 1.05640 0.92562 1.20475 1.33434 0.96760 1.04158 0.91479 1.25015 0.95687 0.96120 0.96668 1.69970 1.41642 1.02408 1.33361 0.86543 0.79914 0.78232 0.83139 1.20722 1.21014 1.19559 0.91656 0.92294 0.91563 0.85505 0.85414 0.77263 0.93104 0.88215 0.97094 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.96 36.00 0.36 -0.85 16 2 C -0.13 -1.93 5.90 -104.31 -0.62 -2.54 16 3 C -0.09 -1.27 9.66 -39.67 -0.38 -1.65 16 4 C -0.15 -2.25 9.86 -39.46 -0.39 -2.64 16 5 C 0.02 0.28 6.31 -39.64 -0.25 0.03 16 6 Cl -0.06 -1.20 27.29 -51.86 -1.41 -2.62 16 7 C -0.09 -1.94 4.79 -104.33 -0.50 -2.44 16 8 C 0.16 3.12 6.81 -83.70 -0.57 2.55 16 9 N -0.68 -13.63 5.80 -9.70 -0.06 -13.68 16 10 C 0.53 13.12 7.19 -10.83 -0.08 13.05 16 11 O -0.47 -13.24 16.03 5.55 0.09 -13.15 16 12 C 0.09 2.28 0.52 -157.41 -0.08 2.20 16 13 C -0.12 -2.98 8.38 37.16 0.31 -2.67 16 14 C -0.51 -13.63 7.86 -34.44 -0.27 -13.90 16 15 H 0.07 1.80 7.77 -52.49 -0.41 1.40 16 16 C 0.07 1.97 5.17 -17.82 -0.09 1.88 16 17 N -0.84 -23.84 9.18 55.43 0.51 -23.33 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 24 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 26 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.39 6.58 8.47 -40.82 -0.35 6.24 16 28 H 0.05 1.16 6.79 -51.93 -0.35 0.81 16 29 H 0.10 2.67 5.90 -51.92 -0.31 2.36 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 276.89 15.07 4.17 4.17 Total: -1.00 -30.29 276.89 -7.33 -37.62 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.05 Total: 1.66 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.56 Total: -6.99 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.45 Total: -37.01 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.41 Total: -2.62 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.29 -7.33 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.125 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds