Wall clock time and date at job start Mon Mar 30 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37987 * 119.92086 * 2 1 4 4 C 1.38242 * 120.39000 * 179.97438 * 3 2 1 5 5 C 1.38558 * 119.81022 * 0.30713 * 4 3 2 6 6 Cl 1.73597 * 120.05614 * 179.71482 * 5 4 3 7 7 C 1.37754 * 119.88386 * 359.42103 * 5 4 3 8 8 C 1.38921 * 120.80067 * 0.55985 * 7 5 4 9 9 N 1.39527 * 110.21904 * 179.72545 * 8 7 5 10 10 C 1.34371 * 112.25343 * 359.97438 * 9 8 7 11 11 O 1.21290 * 126.43887 * 180.02562 * 10 9 8 12 12 C 1.51132 * 132.85433 * 180.19713 * 7 5 4 13 13 C 1.52999 * 110.51014 * 298.96981 * 12 7 5 14 14 C 1.50701 * 110.51325 * 61.67498 * 12 7 5 15 15 H 1.08000 * 119.99874 * 0.02562 * 14 12 7 16 16 C 1.37878 * 120.00316 * 179.97438 * 14 12 7 17 17 N 1.31513 * 119.99571 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 120.00116 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47174 * 90.00153 * 18 16 14 20 20 H 1.48501 * 109.47299 * 210.00365 * 18 16 14 21 21 H 1.48498 * 109.47241 * 330.00148 * 18 16 14 22 22 H 1.08992 * 109.47551 * 89.99598 * 1 2 3 23 23 H 1.09003 * 109.46896 * 209.99828 * 1 2 3 24 24 H 1.09003 * 109.47210 * 329.99302 * 1 2 3 25 25 H 1.08004 * 119.80646 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.09199 * 180.02562 * 4 3 2 27 27 H 0.97001 * 123.87284 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47175 * 60.00232 * 13 12 7 29 29 H 1.09007 * 109.47302 * 180.02562 * 13 12 7 30 30 H 1.09003 * 109.47137 * 299.99739 * 13 12 7 31 31 H 0.97002 * 120.00151 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1960 0.0000 4 6 3.5776 1.2073 0.0005 5 6 4.2763 0.0107 -0.0054 6 17 6.0122 0.0175 -0.0122 7 6 3.5910 -1.1842 0.0003 8 6 2.2019 -1.2076 0.0003 9 7 1.7419 -2.5249 0.0003 10 6 2.7482 -3.4154 -0.0002 11 8 2.6410 -4.6235 -0.0007 12 6 4.0407 -2.6271 0.0003 13 6 4.8560 -2.9344 -1.2573 14 6 4.8438 -2.9299 1.2390 15 1 5.0207 -2.1554 1.9706 16 6 5.3521 -4.1959 1.4387 17 7 5.1363 -5.1391 0.5479 18 14 6.3470 -4.5714 2.9743 19 1 5.4374 -5.0361 4.0522 20 1 7.3407 -5.6331 2.6731 21 1 7.0541 -3.3435 3.4186 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6508 2.1287 0.0004 26 1 4.1115 2.1461 0.0009 27 1 0.8033 -2.7697 0.0000 28 1 5.7345 -2.2899 -1.2873 29 1 5.1709 -3.9779 -1.2402 30 1 4.2431 -2.7547 -2.1406 31 1 5.4942 -6.0297 0.6882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:51 Heat of formation + Delta-G solvation = -27.405080 kcal Electronic energy + Delta-G solvation = -18255.044029 eV Core-core repulsion = 15333.506430 eV Total energy + Delta-G solvation = -2921.537599 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.30542 -39.24336 -37.31321 -36.39748 -35.66262 -33.70665 -31.94691 -29.72977 -27.44074 -27.38588 -25.51305 -23.04968 -21.95192 -20.92544 -18.84176 -18.10303 -17.34309 -16.84515 -16.37959 -15.99549 -15.66772 -14.91328 -14.80481 -14.57852 -14.53876 -13.80874 -13.53446 -13.40418 -13.05470 -12.95415 -12.79146 -12.54813 -12.40188 -12.33768 -12.20254 -11.71060 -11.53837 -11.29449 -11.25391 -10.63371 -10.28662 -9.32207 -8.76866 -8.02973 -6.22608 0.28749 0.43475 1.39140 1.40506 1.44342 1.50823 1.95780 2.32870 2.43511 2.85810 3.18604 3.71808 4.00953 4.03340 4.23778 4.36803 4.65494 4.72109 4.77271 4.90029 4.90332 5.04125 5.20117 5.26783 5.34031 5.49093 5.52103 5.63530 5.80981 5.94183 6.08179 6.16277 6.31493 6.76890 7.42418 7.52195 8.93587 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.009656 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.568712 B = 2899.194331 C = 3718.758342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.078 4.078 4 C -0.134 4.134 5 C -0.005 4.005 6 Cl -0.075 7.075 7 C -0.125 4.125 8 C 0.136 3.864 9 N -0.667 5.667 10 C 0.518 3.482 11 O -0.519 6.519 12 C 0.081 3.919 13 C -0.113 4.113 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.867 5.867 18 Si 0.948 3.052 19 H -0.284 1.284 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.178 0.822 26 H 0.160 0.840 27 H 0.406 0.594 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.017 0.983 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 14.805 -1.835 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.153 4.153 5 C -0.032 4.032 6 Cl -0.046 7.046 7 C -0.128 4.128 8 C 0.038 3.962 9 N -0.312 5.312 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.077 3.923 13 C -0.171 4.171 14 C -0.551 4.551 15 H 0.077 0.923 16 C -0.179 4.179 17 N -0.502 5.502 18 Si 0.773 3.227 19 H -0.210 1.210 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.196 0.804 26 H 0.177 0.823 27 H 0.245 0.755 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.629 13.821 -1.893 15.445 hybrid contribution 0.438 -1.142 0.789 1.455 sum -6.191 12.679 -1.104 14.153 Atomic orbital electron populations 1.20756 0.88385 1.03802 1.03349 1.19669 0.97797 0.89312 1.04610 1.21047 0.92612 0.97747 0.98200 1.21242 0.94841 0.95929 1.03330 1.20247 0.84407 0.93494 1.05072 1.98332 1.10681 1.98813 1.96806 1.20103 0.93590 0.95527 1.03609 1.18181 0.92304 0.85295 1.00433 1.43944 1.09888 1.05066 1.72291 1.21997 0.87852 0.86697 0.72673 1.90647 1.86027 1.13809 1.48753 1.17659 0.91050 0.86327 0.97270 1.21506 0.98599 1.03602 0.93359 1.20640 1.33414 0.96313 1.04780 0.92349 1.25719 0.96837 0.96260 0.99087 1.70138 1.42825 1.02381 1.34851 0.85712 0.78669 0.78226 0.80064 1.20980 1.20639 1.18730 0.89939 0.92548 0.88503 0.80434 0.82259 0.75493 0.92693 0.91323 0.96384 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.96 71.24 0.71 -1.18 16 2 C -0.11 -2.88 5.90 -19.66 -0.12 -3.00 16 3 C -0.08 -1.69 9.66 22.21 0.21 -1.48 16 4 C -0.13 -3.50 9.86 22.35 0.22 -3.28 16 5 C -0.01 -0.18 6.31 22.23 0.14 -0.04 16 6 Cl -0.08 -2.74 27.29 -2.72 -0.07 -2.82 16 7 C -0.12 -5.21 4.79 -19.68 -0.09 -5.30 16 8 C 0.14 4.93 6.81 38.34 0.26 5.20 16 9 N -0.67 -26.64 5.80 -303.22 -1.76 -28.40 16 10 C 0.52 26.59 7.19 87.94 0.63 27.22 16 11 O -0.52 -30.57 16.03 -3.06 -0.05 -30.62 16 12 C 0.08 4.04 0.52 -54.06 -0.03 4.02 16 13 C -0.11 -5.65 8.38 71.98 0.60 -5.05 16 14 C -0.51 -28.14 7.86 25.60 0.20 -27.93 16 15 H 0.06 3.21 7.77 -2.91 -0.02 3.18 16 16 C 0.02 1.40 5.17 84.66 0.44 1.84 16 17 N -0.87 -51.40 9.18 21.45 0.20 -51.20 16 18 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.06 7.58 -2.39 -0.02 1.04 16 24 H 0.10 1.20 8.08 -2.39 -0.02 1.18 16 25 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 26 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 27 H 0.41 13.46 8.47 -92.71 -0.79 12.68 16 28 H 0.05 2.60 6.79 -2.39 -0.02 2.59 16 29 H 0.07 3.87 5.90 -2.38 -0.01 3.86 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -69.45 276.89 3.91 -65.54 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.39 Total: 9.66 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 3.18 Total: -9.00 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.56 Total: -79.59 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.05 Total: -30.62 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.82 kcal Total: -69.45 3.91 -65.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.137 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds