Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 119.91795 * 2 1 4 4 C 1.38232 * 120.39018 * 179.72533 * 3 2 1 5 5 C 1.38562 * 119.80988 * 359.97438 * 4 3 2 6 6 Cl 1.73603 * 120.05877 * 180.02562 * 5 4 3 7 7 C 1.37752 * 119.88591 * 0.02562 * 5 4 3 8 8 C 1.38919 * 120.79904 * 359.97438 * 7 5 4 9 9 N 1.39534 * 110.22085 * 179.97438 * 8 7 5 10 10 C 1.34370 * 112.24837 * 0.02562 * 9 8 7 11 11 O 1.21296 * 126.44119 * 180.02562 * 10 9 8 12 12 C 1.51137 * 132.85700 * 179.97438 * 7 5 4 13 13 C 1.53005 * 110.50869 * 61.39049 * 12 7 5 14 14 C 1.50697 * 110.51072 * 298.68378 * 12 7 5 15 15 H 1.08001 * 120.00216 * 0.02562 * 14 12 7 16 16 C 1.37882 * 119.99988 * 179.97438 * 14 12 7 17 17 N 1.31513 * 119.99949 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99906 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47060 * 90.00202 * 18 16 14 20 20 H 1.48504 * 109.46860 * 210.00492 * 18 16 14 21 21 H 1.48501 * 109.47131 * 329.99988 * 18 16 14 22 22 H 1.09002 * 109.47316 * 90.00343 * 1 2 3 23 23 H 1.09006 * 109.47287 * 210.00051 * 1 2 3 24 24 H 1.08995 * 109.47754 * 330.00028 * 1 2 3 25 25 H 1.08005 * 119.80326 * 359.74274 * 3 2 1 26 26 H 1.07996 * 120.09666 * 180.02562 * 4 3 2 27 27 H 0.97001 * 123.87649 * 180.02562 * 9 8 7 28 28 H 1.09001 * 109.47421 * 60.00075 * 13 12 7 29 29 H 1.08997 * 109.47290 * 179.97438 * 13 12 7 30 30 H 1.09004 * 109.47124 * 300.00129 * 13 12 7 31 31 H 0.97000 * 119.99966 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1961 0.0000 4 6 3.5775 1.2075 0.0057 5 6 4.2762 0.0109 0.0120 6 17 6.0122 0.0177 0.0199 7 6 3.5909 -1.1841 0.0120 8 6 2.2019 -1.2075 0.0063 9 7 1.7418 -2.5248 0.0070 10 6 2.7482 -3.4152 0.0134 11 8 2.6412 -4.6234 0.0150 12 6 4.0406 -2.6270 0.0173 13 6 4.8500 -2.9315 1.2795 14 6 4.8497 -2.9324 -1.2168 15 1 5.0306 -2.1594 -1.9489 16 6 5.3597 -4.1987 -1.4108 17 7 5.1398 -5.1399 -0.5191 18 14 6.3620 -4.5775 -2.9410 19 1 7.7975 -4.3101 -2.6712 20 1 6.1848 -6.0056 -3.3077 21 1 5.9002 -3.7180 -4.0605 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 1.6507 2.1288 -0.0042 26 1 4.1113 2.1462 0.0061 27 1 0.8033 -2.7697 0.0032 28 1 4.2330 -2.7499 2.1596 29 1 5.1650 -3.9749 1.2663 30 1 5.7284 -2.2869 1.3123 31 1 5.4983 -6.0308 -0.6557 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763275.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -27.404199 kcal Electronic energy + Delta-G solvation = -18254.904458 eV Core-core repulsion = 15333.366897 eV Total energy + Delta-G solvation = -2921.537561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30497 -39.24270 -37.31278 -36.39663 -35.66271 -33.70600 -31.94686 -29.73095 -27.44074 -27.38560 -25.51318 -23.04957 -21.95171 -20.92603 -18.83951 -18.10514 -17.34165 -16.84628 -16.37999 -15.99475 -15.66730 -14.91447 -14.79385 -14.57418 -14.55499 -13.78817 -13.58221 -13.37371 -13.05801 -12.95964 -12.74273 -12.57599 -12.40846 -12.33500 -12.20400 -11.72040 -11.54093 -11.29661 -11.26193 -10.61514 -10.29142 -9.32208 -8.76919 -8.02972 -6.22572 0.28727 0.43453 1.39724 1.40610 1.44284 1.49946 1.95843 2.32664 2.43499 2.86057 3.18538 3.71792 4.00954 4.03374 4.23821 4.36820 4.65470 4.72083 4.77382 4.89539 4.90348 5.04125 5.20094 5.26706 5.33985 5.49060 5.52106 5.63474 5.80988 5.94210 6.08192 6.16282 6.31507 6.76932 7.42478 7.52237 8.93572 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.009659 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.793346 B = 2898.219524 C = 3719.305500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.078 4.078 4 C -0.134 4.134 5 C -0.005 4.005 6 Cl -0.075 7.075 7 C -0.125 4.125 8 C 0.136 3.864 9 N -0.667 5.667 10 C 0.518 3.482 11 O -0.519 6.519 12 C 0.081 3.919 13 C -0.113 4.113 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.867 5.867 18 Si 0.948 3.052 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.270 1.270 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.178 0.822 26 H 0.160 0.840 27 H 0.407 0.593 28 H 0.017 0.983 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 14.804 1.732 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.153 4.153 5 C -0.032 4.032 6 Cl -0.046 7.046 7 C -0.128 4.128 8 C 0.038 3.962 9 N -0.312 5.312 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.077 3.923 13 C -0.171 4.171 14 C -0.551 4.551 15 H 0.077 0.923 16 C -0.179 4.179 17 N -0.502 5.502 18 Si 0.773 3.227 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.194 1.194 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.117 0.883 25 H 0.196 0.804 26 H 0.177 0.823 27 H 0.245 0.755 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.662 13.818 1.790 15.444 hybrid contribution 0.466 -1.134 -0.773 1.449 sum -6.196 12.684 1.017 14.153 Atomic orbital electron populations 1.20756 0.88386 1.03931 1.03224 1.19669 0.97798 0.89317 1.04616 1.21048 0.92620 0.97747 0.98194 1.21240 0.94840 0.95931 1.03334 1.20248 0.84413 0.93490 1.05064 1.98332 1.10668 1.98816 1.96807 1.20105 0.93591 0.95528 1.03615 1.18181 0.92307 0.85298 1.00425 1.43941 1.09888 1.05060 1.72295 1.21991 0.87834 0.86697 0.72677 1.90650 1.86023 1.13799 1.48762 1.17658 0.91072 0.86326 0.97248 1.21506 0.98595 1.03601 0.93365 1.20637 1.33122 0.96346 1.05043 0.92349 1.25719 0.96855 0.96257 0.99056 1.70138 1.42671 1.02461 1.34926 0.85712 0.79540 0.77022 0.80386 1.19508 1.21428 1.19427 0.90315 0.92334 0.88343 0.80434 0.82254 0.75485 0.96388 0.91314 0.92723 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.97 71.23 0.71 -1.19 16 2 C -0.11 -2.89 5.90 -19.66 -0.12 -3.00 16 3 C -0.08 -1.69 9.66 22.21 0.21 -1.48 16 4 C -0.13 -3.50 9.86 22.35 0.22 -3.28 16 5 C -0.01 -0.18 6.31 22.23 0.14 -0.04 16 6 Cl -0.08 -2.74 27.29 -2.72 -0.07 -2.81 16 7 C -0.12 -5.21 4.79 -19.68 -0.09 -5.31 16 8 C 0.14 4.94 6.81 38.34 0.26 5.20 16 9 N -0.67 -26.62 5.80 -303.22 -1.76 -28.38 16 10 C 0.52 26.59 7.19 87.94 0.63 27.22 16 11 O -0.52 -30.56 16.04 -3.08 -0.05 -30.60 16 12 C 0.08 4.04 0.52 -54.06 -0.03 4.02 16 13 C -0.11 -5.65 8.39 71.98 0.60 -5.05 16 14 C -0.51 -28.13 7.84 25.60 0.20 -27.93 16 15 H 0.06 3.21 7.77 -2.91 -0.02 3.18 16 16 C 0.03 1.41 5.17 84.66 0.44 1.85 16 17 N -0.87 -51.40 9.18 21.45 0.20 -51.20 16 18 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.07 7.58 -2.38 -0.02 1.05 16 24 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 25 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 26 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 27 H 0.41 13.45 8.47 -92.71 -0.79 12.67 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 3.88 5.89 -2.39 -0.01 3.86 16 30 H 0.05 2.59 6.82 -2.38 -0.02 2.58 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -69.42 276.90 3.91 -65.51 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.39 Total: 9.66 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 3.18 Total: -9.00 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.56 Total: -79.58 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.60 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -69.42 3.91 -65.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763275.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.104 kcal (2) G-P(sol) polarization free energy of solvation -69.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds