Wall clock time and date at job start Mon Mar 30 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99982 * 3 2 1 5 5 H 1.48499 * 109.47235 * 29.99456 * 3 2 1 6 6 H 1.48496 * 109.47119 * 149.99752 * 3 2 1 7 7 C 1.37867 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00379 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47002 * 60.00263 * 9 7 2 11 11 C 1.53001 * 109.47261 * 179.97438 * 9 7 2 12 12 N 1.46507 * 109.46778 * 185.00068 * 11 9 7 13 13 C 1.34778 * 119.99439 * 180.02562 * 12 11 9 14 14 O 1.21274 * 120.00196 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99608 * 180.02562 * 13 12 11 16 16 C 1.52992 * 117.49984 * 248.74623 * 15 13 12 17 17 C 1.52996 * 117.50074 * 180.08579 * 15 13 12 18 18 C 1.50702 * 109.47099 * 300.00557 * 9 7 2 19 19 C 1.33388 * 125.20547 * 120.00174 * 18 9 7 20 20 C 1.38421 * 114.92066 * 180.29144 * 19 18 9 21 21 C 1.33395 * 114.92147 * 359.48238 * 20 19 18 22 22 S 1.75885 * 125.19995 * 300.01529 * 18 9 7 23 23 H 0.97001 * 120.00281 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47055 * 305.00233 * 11 9 7 25 25 H 1.08994 * 109.46898 * 65.00624 * 11 9 7 26 26 H 0.97000 * 120.00288 * 0.02562 * 12 11 9 27 27 H 1.09002 * 115.55055 * 34.41873 * 15 13 12 28 28 H 1.09000 * 117.49774 * 0.02562 * 16 15 13 29 29 H 1.09003 * 117.50087 * 145.02218 * 16 15 13 30 30 H 1.08994 * 117.50236 * 214.98254 * 17 15 13 31 31 H 1.09011 * 117.49646 * 359.97438 * 17 15 13 32 32 H 1.08002 * 122.53671 * 0.02562 * 19 18 9 33 33 H 1.08001 * 122.54223 * 179.72513 * 20 19 18 34 34 H 1.07998 * 125.20353 * 180.21324 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6242 -2.5575 -0.8880 11 6 2.2454 -3.6620 0.0015 12 7 1.5168 -4.9274 -0.1178 13 6 2.1914 -6.0940 -0.1388 14 8 3.4016 -6.0962 -0.0594 15 6 1.4420 -7.3956 -0.2620 16 6 1.4325 -8.3233 0.9546 17 6 2.2645 -8.6856 -0.2781 18 6 0.3851 -2.5781 1.2325 19 6 -0.9431 -2.7006 1.2316 20 6 -1.5254 -2.7470 2.4865 21 6 -0.6690 -2.6731 3.5066 22 16 0.9712 -2.5225 2.8899 23 1 -0.4850 0.8400 -0.0004 24 1 2.9289 -3.5554 -0.8409 25 1 2.8122 -3.6555 0.9324 26 1 0.5489 -4.9256 -0.1817 27 1 0.5433 -7.3642 -0.8780 28 1 1.9679 -7.9919 1.8443 29 1 0.5276 -8.9024 1.1388 30 1 1.9067 -9.5029 -0.9042 31 1 3.3478 -8.5928 -0.1999 32 1 -1.5209 -2.7550 0.3207 33 1 -2.5919 -2.8402 2.6291 34 1 -0.9416 -2.6972 4.5514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:18 Heat of formation + Delta-G solvation = 10.101940 kcal Electronic energy + Delta-G solvation = -17630.938042 eV Core-core repulsion = 14848.903671 eV Total energy + Delta-G solvation = -2782.034372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54013 -37.16652 -36.05288 -34.80237 -33.05067 -30.59771 -27.46668 -25.58618 -23.54854 -22.76685 -22.40014 -20.61600 -19.71635 -18.23479 -17.26418 -16.95772 -15.52003 -15.33901 -14.94716 -14.71622 -14.51922 -14.20913 -13.63782 -12.78737 -12.67596 -12.35331 -11.94140 -11.76834 -11.55829 -11.40300 -11.06557 -11.00810 -10.76049 -10.64747 -10.57585 -10.43668 -9.93341 -9.75041 -9.48472 -9.30450 -8.63803 -8.46402 -7.47058 -7.42412 -6.13605 -4.26586 2.13208 2.73155 2.84652 3.15368 3.24613 3.32000 3.35126 3.61540 3.87879 3.97931 4.34248 4.81099 4.93325 4.95331 5.15992 5.30271 5.57860 5.75381 5.83488 5.93906 5.98131 6.13106 6.17361 6.28313 6.46029 6.56844 6.79755 6.95542 7.09885 7.30627 7.47356 7.60606 7.76865 7.98894 8.09634 8.66808 8.76228 9.41052 10.89346 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.006469 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.949415 B = 4327.358062 C = 5148.002852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.094 3.906 10 H 0.054 0.946 11 C 0.129 3.871 12 N -0.715 5.715 13 C 0.536 3.464 14 O -0.552 6.552 15 C -0.192 4.192 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.057 4.057 19 C -0.171 4.171 20 C -0.118 4.118 21 C -0.264 4.264 22 S 0.065 5.935 23 H 0.263 0.737 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.399 0.601 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -11.137 1.914 11.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.073 3.927 10 H 0.071 0.929 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.321 3.679 14 O -0.431 6.431 15 C -0.213 4.213 16 C -0.192 4.192 17 C -0.188 4.188 18 C -0.175 4.175 19 C -0.199 4.199 20 C -0.150 4.150 21 C -0.399 4.399 22 S 0.327 5.673 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.233 0.767 27 H 0.139 0.861 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.513 -10.843 2.656 11.175 hybrid contribution -1.797 1.203 -0.575 2.237 sum -2.309 -9.640 2.081 10.129 Atomic orbital electron populations 1.69997 1.05795 1.26938 1.47502 1.24933 0.94864 0.99231 0.94084 0.86567 0.80072 0.83130 0.78227 1.20492 1.21136 1.19589 1.20833 0.93020 0.88889 1.53883 0.91661 1.17779 0.91942 0.92664 0.90270 0.92859 1.21687 0.95216 0.81260 1.01261 1.46147 1.10819 1.06304 1.73174 1.19583 0.87422 0.84553 0.76320 1.90656 1.14109 1.87567 1.50793 1.22235 1.03029 0.90757 1.05271 1.22908 1.02595 1.01210 0.92452 1.22917 0.99602 0.95806 1.00523 1.25019 0.97143 0.98690 0.96694 1.19749 0.93949 1.08984 0.97188 1.19986 0.99353 1.03060 0.92571 1.25201 0.96910 1.16031 1.01792 1.83953 1.08079 1.73561 1.01745 0.92734 0.91643 0.92255 0.76686 0.86120 0.88302 0.88059 0.88276 0.87544 0.85842 0.86410 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.16 12.08 55.43 0.67 -22.49 16 2 C 0.07 1.93 5.30 -17.82 -0.09 1.84 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -13.42 8.47 -34.44 -0.29 -13.71 16 8 H 0.07 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.09 2.13 2.20 -92.92 -0.20 1.92 16 10 H 0.05 1.27 8.08 -51.93 -0.42 0.85 16 11 C 0.13 2.63 4.97 -4.04 -0.02 2.61 16 12 N -0.72 -12.38 5.35 -60.29 -0.32 -12.71 16 13 C 0.54 9.18 7.61 -10.98 -0.08 9.10 16 14 O -0.55 -11.48 16.26 5.56 0.09 -11.39 16 15 C -0.19 -2.43 6.19 -91.77 -0.57 -3.00 16 16 C -0.15 -1.69 10.24 -26.70 -0.27 -1.96 16 17 C -0.15 -1.69 10.05 -26.70 -0.27 -1.96 16 18 C -0.06 -1.24 3.50 -36.00 -0.13 -1.37 16 19 C -0.17 -3.53 9.64 -41.21 -0.40 -3.93 16 20 C -0.12 -2.21 10.18 -41.21 -0.42 -2.63 16 21 C -0.26 -4.93 11.23 29.04 0.33 -4.60 16 22 S 0.06 1.34 22.89 -107.50 -2.46 -1.12 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.06 1.29 7.83 -51.93 -0.41 0.88 16 26 H 0.40 6.20 8.23 -40.82 -0.34 5.86 16 27 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.36 7.67 -51.92 -0.40 0.96 16 32 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -28.75 309.75 -9.28 -38.03 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.48 Total: 7.13 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.42 Total: -17.70 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.35 Total: -35.20 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.46 Total: -1.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.75 -9.28 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.137 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds