Wall clock time and date at job start Mon Mar 30 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99982 * 3 2 1 5 5 H 1.48499 * 109.47235 * 29.99456 * 3 2 1 6 6 H 1.48496 * 109.47119 * 149.99752 * 3 2 1 7 7 C 1.37867 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00379 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47002 * 60.00263 * 9 7 2 11 11 C 1.53001 * 109.47261 * 179.97438 * 9 7 2 12 12 N 1.46507 * 109.46778 * 185.00068 * 11 9 7 13 13 C 1.34778 * 119.99439 * 180.02562 * 12 11 9 14 14 O 1.21274 * 120.00196 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99608 * 180.02562 * 13 12 11 16 16 C 1.52992 * 117.49984 * 248.74623 * 15 13 12 17 17 C 1.52996 * 117.50074 * 180.08579 * 15 13 12 18 18 C 1.50702 * 109.47099 * 300.00557 * 9 7 2 19 19 C 1.33388 * 125.20547 * 120.00174 * 18 9 7 20 20 C 1.38421 * 114.92066 * 180.29144 * 19 18 9 21 21 C 1.33395 * 114.92147 * 359.48238 * 20 19 18 22 22 S 1.75885 * 125.19995 * 300.01529 * 18 9 7 23 23 H 0.97001 * 120.00281 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47055 * 305.00233 * 11 9 7 25 25 H 1.08994 * 109.46898 * 65.00624 * 11 9 7 26 26 H 0.97000 * 120.00288 * 0.02562 * 12 11 9 27 27 H 1.09002 * 115.55055 * 34.41873 * 15 13 12 28 28 H 1.09000 * 117.49774 * 0.02562 * 16 15 13 29 29 H 1.09003 * 117.50087 * 145.02218 * 16 15 13 30 30 H 1.08994 * 117.50236 * 214.98254 * 17 15 13 31 31 H 1.09011 * 117.49646 * 359.97438 * 17 15 13 32 32 H 1.08002 * 122.53671 * 0.02562 * 19 18 9 33 33 H 1.08001 * 122.54223 * 179.72513 * 20 19 18 34 34 H 1.07998 * 125.20353 * 180.21324 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6242 -2.5575 -0.8880 11 6 2.2454 -3.6620 0.0015 12 7 1.5168 -4.9274 -0.1178 13 6 2.1914 -6.0940 -0.1388 14 8 3.4016 -6.0962 -0.0594 15 6 1.4420 -7.3956 -0.2620 16 6 1.4325 -8.3233 0.9546 17 6 2.2645 -8.6856 -0.2781 18 6 0.3851 -2.5781 1.2325 19 6 -0.9431 -2.7006 1.2316 20 6 -1.5254 -2.7470 2.4865 21 6 -0.6690 -2.6731 3.5066 22 16 0.9712 -2.5225 2.8899 23 1 -0.4850 0.8400 -0.0004 24 1 2.9289 -3.5554 -0.8409 25 1 2.8122 -3.6555 0.9324 26 1 0.5489 -4.9256 -0.1817 27 1 0.5433 -7.3642 -0.8780 28 1 1.9679 -7.9919 1.8443 29 1 0.5276 -8.9024 1.1388 30 1 1.9067 -9.5029 -0.9042 31 1 3.3478 -8.5928 -0.1999 32 1 -1.5209 -2.7550 0.3207 33 1 -2.5919 -2.8402 2.6291 34 1 -0.9416 -2.6972 4.5514 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:18 Heat of formation + Delta-G solvation = -6.216284 kcal Electronic energy + Delta-G solvation = -17631.645654 eV Core-core repulsion = 14848.903671 eV Total energy + Delta-G solvation = -2782.741983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90163 -38.73423 -37.20317 -36.36094 -34.84129 -32.34581 -29.05332 -27.28246 -25.08571 -24.21052 -23.26623 -22.29296 -21.05322 -19.80038 -18.87078 -18.40046 -17.17859 -16.78368 -16.52702 -16.35298 -15.97259 -15.58425 -14.95688 -14.50829 -14.34683 -13.57640 -13.47527 -13.42263 -13.07251 -12.86786 -12.75035 -12.56934 -12.39993 -12.31821 -11.77535 -11.49841 -11.42552 -11.36825 -11.24322 -10.82664 -10.59480 -10.01924 -9.10221 -9.03773 -8.10453 -6.28948 0.56788 1.16206 1.39795 1.42828 1.50603 1.55078 1.57138 2.24824 2.30199 2.46631 2.98203 3.16527 3.78985 3.91687 4.04408 4.27012 4.28002 4.42783 4.47210 4.63357 4.77076 4.86714 4.94259 4.99931 5.07036 5.15753 5.26857 5.35896 5.48376 5.60830 5.71324 5.90998 5.96824 6.20508 6.64476 6.75308 7.29964 7.40117 8.89311 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.006469 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.949415 B = 4327.358062 C = 5148.002852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.101 3.899 10 H 0.037 0.963 11 C 0.144 3.856 12 N -0.709 5.709 13 C 0.530 3.470 14 O -0.596 6.596 15 C -0.203 4.203 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.079 4.079 19 C -0.169 4.169 20 C -0.124 4.124 21 C -0.249 4.249 22 S 0.034 5.966 23 H 0.261 0.739 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.410 0.590 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.310 -12.278 2.586 13.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.080 3.920 10 H 0.054 0.946 11 C 0.020 3.980 12 N -0.358 5.358 13 C 0.318 3.682 14 O -0.478 6.478 15 C -0.224 4.224 16 C -0.179 4.179 17 C -0.183 4.183 18 C -0.196 4.196 19 C -0.197 4.197 20 C -0.155 4.155 21 C -0.383 4.383 22 S 0.295 5.705 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.245 0.755 27 H 0.168 0.832 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.230 -11.996 3.321 12.645 hybrid contribution -1.267 1.519 -0.759 2.119 sum -3.498 -10.477 2.561 11.339 Atomic orbital electron populations 1.70077 1.06515 1.27197 1.48385 1.25470 0.95547 1.01495 0.94054 0.85811 0.78946 0.80251 0.78268 1.19981 1.21035 1.19760 1.21077 0.92789 0.90538 1.53601 0.92809 1.17552 0.91845 0.92189 0.90371 0.94558 1.21264 0.94630 0.82451 0.99647 1.46007 1.11188 1.05513 1.73109 1.20436 0.87182 0.85776 0.74804 1.90632 1.16220 1.88266 1.52649 1.22268 1.03985 0.88477 1.07623 1.23037 1.03568 1.00006 0.91261 1.23021 0.98409 0.95625 1.01243 1.24756 0.97467 1.00843 0.96575 1.19949 0.93552 1.07966 0.98267 1.20258 1.01081 1.02668 0.91524 1.25569 0.95025 1.14308 1.03421 1.84034 1.10466 1.74265 1.01696 0.92962 0.93189 0.93961 0.75470 0.83235 0.89932 0.84685 0.84968 0.89811 0.85855 0.83143 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.39 12.08 21.44 0.26 -47.13 16 2 C 0.04 1.96 5.30 84.65 0.45 2.41 16 3 Si 0.94 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -28.20 8.47 25.60 0.22 -27.98 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.10 4.68 2.20 -12.29 -0.03 4.65 16 10 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 11 C 0.14 6.13 4.97 86.38 0.43 6.55 16 12 N -0.71 -24.80 5.35 -463.05 -2.48 -27.28 16 13 C 0.53 18.22 7.61 87.66 0.67 18.89 16 14 O -0.60 -25.50 16.26 -3.01 -0.05 -25.55 16 15 C -0.20 -4.75 6.19 -11.54 -0.07 -4.82 16 16 C -0.14 -2.74 10.24 30.61 0.31 -2.42 16 17 C -0.15 -2.95 10.05 30.62 0.31 -2.64 16 18 C -0.08 -3.40 3.50 24.59 0.09 -3.32 16 19 C -0.17 -6.78 9.64 21.22 0.20 -6.58 16 20 C -0.12 -4.33 10.18 21.22 0.22 -4.11 16 21 C -0.25 -8.58 11.23 66.72 0.75 -7.84 16 22 S 0.03 1.39 22.89 -56.49 -1.29 0.10 16 23 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 24 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.92 7.83 -2.39 -0.02 1.90 16 26 H 0.41 12.58 8.23 -92.71 -0.76 11.81 16 27 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.11 7.67 -2.38 -0.02 2.09 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 34 H 0.18 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -62.58 309.75 2.35 -60.23 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.34 Total: 22.35 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 3.54 Total: -27.21 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -2.22 Total: -74.41 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.29 Total: 0.10 kcal Total: -62.58 2.35 -60.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.013 kcal (2) G-P(sol) polarization free energy of solvation -62.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds