Wall clock time and date at job start Mon Mar 30 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47144 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47174 * 59.99918 * 9 7 2 12 12 N 1.46503 * 109.47044 * 65.00160 * 11 9 7 13 13 C 1.34775 * 119.99708 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00591 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99671 * 179.97438 * 13 12 11 16 16 C 1.53004 * 117.50148 * 248.62264 * 15 13 12 17 17 C 1.52999 * 60.00175 * 252.51117 * 16 15 13 18 18 C 1.50706 * 109.47256 * 299.99936 * 9 7 2 19 19 C 1.33381 * 125.20128 * 240.00096 * 18 9 7 20 20 C 1.38419 * 114.92040 * 179.97438 * 19 18 9 21 21 C 1.33390 * 114.92399 * 0.02562 * 20 19 18 22 22 S 1.75877 * 125.20158 * 59.69610 * 18 9 7 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09002 * 109.47338 * 184.99796 * 11 9 7 25 25 H 1.09001 * 109.47078 * 305.00067 * 11 9 7 26 26 H 0.96995 * 120.00120 * 359.97438 * 12 11 9 27 27 H 1.08995 * 115.55257 * 34.33702 * 15 13 12 28 28 H 1.09000 * 117.49613 * 359.97438 * 16 15 13 29 29 H 1.08993 * 117.50010 * 145.01967 * 16 15 13 30 30 H 1.08991 * 117.50098 * 252.50657 * 17 16 15 31 31 H 1.09005 * 117.51925 * 107.47540 * 17 16 15 32 32 H 1.08006 * 122.54584 * 359.97438 * 19 18 9 33 33 H 1.08001 * 122.54351 * 180.02562 * 20 19 18 34 34 H 1.07999 * 125.20794 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 1.9594 -3.3277 0.0151 11 6 0.3719 -2.5859 -1.2377 12 7 1.2214 -2.6341 -2.4303 13 6 0.6615 -2.7135 -3.6537 14 8 -0.5456 -2.7445 -3.7673 15 6 1.5353 -2.7625 -4.8805 16 6 1.5152 -1.5482 -5.8112 17 6 0.8396 -2.8522 -6.2403 18 6 0.3841 -2.5733 1.2420 19 6 0.4714 -3.5088 2.1888 20 6 -0.4317 -3.3720 3.2288 21 6 -1.2528 -2.3258 3.1264 22 16 -0.8923 -1.4353 1.6531 23 1 -0.4850 0.8401 -0.0041 24 1 -0.2390 -3.4874 -1.1901 25 1 -0.2755 -1.7104 -1.2879 26 1 2.1868 -2.6090 -2.3395 27 1 2.4810 -3.2915 -4.7632 28 1 0.8696 -0.7141 -5.5363 29 1 2.4479 -1.2781 -6.3062 30 1 1.3278 -3.4399 -7.0176 31 1 -0.2502 -2.8762 -6.2474 32 1 1.1921 -4.3121 2.1472 33 1 -0.4688 -4.0603 4.0603 34 1 -2.0188 -2.0631 3.8410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:20 Heat of formation + Delta-G solvation = 11.117645 kcal Electronic energy + Delta-G solvation = -17784.869629 eV Core-core repulsion = 15002.879302 eV Total energy + Delta-G solvation = -2781.990327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28620 -36.87124 -35.87974 -34.90278 -32.98908 -30.44966 -27.05412 -25.76658 -23.67164 -22.32413 -22.16222 -20.70790 -19.47182 -17.95269 -17.04868 -16.88104 -15.25626 -15.24418 -15.05440 -14.61232 -14.11297 -13.92417 -13.50886 -12.99895 -12.23799 -11.95215 -11.79700 -11.53964 -11.47054 -11.42037 -11.10388 -10.98002 -10.81062 -10.61325 -10.44577 -10.28936 -10.11980 -9.60569 -9.30824 -9.19680 -8.54910 -8.03615 -7.19694 -6.83744 -6.33848 -4.57972 2.51325 3.04558 3.07735 3.16576 3.18359 3.38984 3.78647 3.84463 4.08088 4.14258 4.18110 4.89384 4.95435 5.07712 5.12893 5.49257 5.69325 5.89631 6.10644 6.17891 6.24061 6.26193 6.45791 6.58120 6.69572 6.74073 6.88246 7.33746 7.35041 7.43738 7.60167 7.68095 7.77863 7.96173 8.31302 8.45049 8.97402 9.05449 10.46350 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.007166 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.990237 B = 3906.203192 C = 4846.691443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.051 3.949 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.476 4.476 8 H 0.070 0.930 9 C 0.083 3.917 10 H 0.044 0.956 11 C 0.121 3.879 12 N -0.698 5.698 13 C 0.531 3.469 14 O -0.557 6.557 15 C -0.189 4.189 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.134 4.134 19 C -0.196 4.196 20 C -0.153 4.153 21 C -0.364 4.364 22 S 0.289 5.711 23 H 0.284 0.716 24 H 0.034 0.966 25 H 0.104 0.896 26 H 0.397 0.603 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -1.937 -5.540 6.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.513 4.513 8 H 0.088 0.912 9 C 0.063 3.937 10 H 0.062 0.938 11 C -0.002 4.002 12 N -0.346 5.346 13 C 0.317 3.683 14 O -0.437 6.437 15 C -0.210 4.210 16 C -0.192 4.192 17 C -0.190 4.190 18 C -0.254 4.254 19 C -0.227 4.227 20 C -0.184 4.184 21 C -0.500 4.500 22 S 0.551 5.449 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.122 0.878 26 H 0.231 0.769 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.862 -0.487 -6.247 6.536 hybrid contribution 1.636 -0.605 1.215 2.126 sum 3.498 -1.092 -5.031 6.225 Atomic orbital electron populations 1.67411 1.06170 1.27755 1.49604 1.24993 0.94644 1.00317 0.94581 0.86119 0.79795 0.81861 0.78131 1.19473 1.20505 1.20375 1.21509 0.93782 0.90062 1.45975 0.91207 1.17704 0.91999 0.96769 0.87262 0.93780 1.21726 0.93536 1.01694 0.83285 1.45841 1.10706 1.72280 1.05747 1.19494 0.88013 0.76854 0.83984 1.90644 1.14847 1.51449 1.86712 1.22231 1.01838 1.05697 0.91242 1.22881 1.02908 0.92006 1.01436 1.22890 1.01165 0.99979 0.95001 1.24811 1.00963 0.98138 1.01506 1.19702 1.03943 1.02206 0.96812 1.19600 0.99375 0.99665 0.99736 1.27871 1.04636 1.03914 1.13614 1.86385 1.26857 1.21040 1.10612 0.90349 0.94774 0.87807 0.76919 0.86359 0.88313 0.88226 0.88462 0.87612 0.87293 0.88681 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.81 6.53 55.43 0.36 -20.45 16 2 C 0.05 1.20 4.98 -17.82 -0.09 1.11 16 3 Si 0.91 19.05 29.54 -169.99 -5.02 14.03 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.48 -11.08 8.22 -34.44 -0.28 -11.37 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.08 1.87 2.53 -92.92 -0.23 1.64 16 10 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 11 C 0.12 2.71 4.82 -4.04 -0.02 2.69 16 12 N -0.70 -13.50 5.35 -60.29 -0.32 -13.82 16 13 C 0.53 10.22 7.61 -10.99 -0.08 10.14 16 14 O -0.56 -12.89 16.26 5.56 0.09 -12.80 16 15 C -0.19 -2.69 6.19 -91.77 -0.57 -3.26 16 16 C -0.15 -1.96 10.23 -26.73 -0.27 -2.24 16 17 C -0.15 -1.93 10.04 -26.73 -0.27 -2.20 16 18 C -0.13 -3.12 5.06 -36.00 -0.18 -3.30 16 19 C -0.20 -4.35 10.01 -41.21 -0.41 -4.76 16 20 C -0.15 -3.28 10.18 -41.21 -0.42 -3.70 16 21 C -0.36 -7.86 11.23 29.04 0.33 -7.54 16 22 S 0.29 6.60 18.49 -107.50 -1.99 4.61 16 23 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 26 H 0.40 6.77 8.23 -40.82 -0.34 6.43 16 27 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 1.52 7.67 -51.93 -0.40 1.12 16 32 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -27.18 299.55 -9.26 -36.44 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.39 Total: 10.26 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.51 Total: -22.79 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.04 Total: -34.27 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -1.99 Total: 4.61 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.18 -9.26 -36.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.557 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds