Wall clock time and date at job start Mon Mar 30 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47144 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47174 * 59.99918 * 9 7 2 12 12 N 1.46503 * 109.47044 * 65.00160 * 11 9 7 13 13 C 1.34775 * 119.99708 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00591 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99671 * 179.97438 * 13 12 11 16 16 C 1.53004 * 117.50148 * 248.62264 * 15 13 12 17 17 C 1.52999 * 60.00175 * 252.51117 * 16 15 13 18 18 C 1.50706 * 109.47256 * 299.99936 * 9 7 2 19 19 C 1.33381 * 125.20128 * 240.00096 * 18 9 7 20 20 C 1.38419 * 114.92040 * 179.97438 * 19 18 9 21 21 C 1.33390 * 114.92399 * 0.02562 * 20 19 18 22 22 S 1.75877 * 125.20158 * 59.69610 * 18 9 7 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09002 * 109.47338 * 184.99796 * 11 9 7 25 25 H 1.09001 * 109.47078 * 305.00067 * 11 9 7 26 26 H 0.96995 * 120.00120 * 359.97438 * 12 11 9 27 27 H 1.08995 * 115.55257 * 34.33702 * 15 13 12 28 28 H 1.09000 * 117.49613 * 359.97438 * 16 15 13 29 29 H 1.08993 * 117.50010 * 145.01967 * 16 15 13 30 30 H 1.08991 * 117.50098 * 252.50657 * 17 16 15 31 31 H 1.09005 * 117.51925 * 107.47540 * 17 16 15 32 32 H 1.08006 * 122.54584 * 359.97438 * 19 18 9 33 33 H 1.08001 * 122.54351 * 180.02562 * 20 19 18 34 34 H 1.07999 * 125.20794 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 1.9594 -3.3277 0.0151 11 6 0.3719 -2.5859 -1.2377 12 7 1.2214 -2.6341 -2.4303 13 6 0.6615 -2.7135 -3.6537 14 8 -0.5456 -2.7445 -3.7673 15 6 1.5353 -2.7625 -4.8805 16 6 1.5152 -1.5482 -5.8112 17 6 0.8396 -2.8522 -6.2403 18 6 0.3841 -2.5733 1.2420 19 6 0.4714 -3.5088 2.1888 20 6 -0.4317 -3.3720 3.2288 21 6 -1.2528 -2.3258 3.1264 22 16 -0.8923 -1.4353 1.6531 23 1 -0.4850 0.8401 -0.0041 24 1 -0.2390 -3.4874 -1.1901 25 1 -0.2755 -1.7104 -1.2879 26 1 2.1868 -2.6090 -2.3395 27 1 2.4810 -3.2915 -4.7632 28 1 0.8696 -0.7141 -5.5363 29 1 2.4479 -1.2781 -6.3062 30 1 1.3278 -3.4399 -7.0176 31 1 -0.2502 -2.8762 -6.2474 32 1 1.1921 -4.3121 2.1472 33 1 -0.4688 -4.0603 4.0603 34 1 -2.0188 -2.0631 3.8410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:19 Heat of formation + Delta-G solvation = -3.566419 kcal Electronic energy + Delta-G solvation = -17785.506378 eV Core-core repulsion = 15002.879302 eV Total energy + Delta-G solvation = -2782.627076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77970 -38.54468 -37.22660 -36.53065 -34.69973 -32.18990 -28.76661 -27.46861 -25.18874 -23.82201 -23.25995 -22.45638 -20.93994 -19.65910 -18.66376 -18.40371 -16.97869 -16.82616 -16.64247 -16.08562 -15.69652 -15.50182 -14.99587 -14.63470 -13.79913 -13.53736 -13.44265 -13.26056 -13.17533 -12.81840 -12.69927 -12.51510 -12.40052 -12.32098 -11.87351 -11.48164 -11.38963 -11.35625 -11.07595 -10.77172 -10.29372 -9.74860 -8.94917 -8.62496 -8.10805 -6.40379 0.76487 1.37406 1.46676 1.53610 1.63933 1.65638 2.06585 2.31367 2.40666 2.48289 3.01667 3.11042 3.85372 3.96604 4.05743 4.30971 4.48207 4.58528 4.64890 4.76008 4.82653 4.94771 4.96737 5.02735 5.07995 5.16942 5.26942 5.51972 5.66992 5.69587 5.80854 5.93832 6.03721 6.21252 6.60142 6.84629 7.24400 7.46475 8.67204 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.007166 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.990237 B = 3906.203192 C = 4846.691443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.017 3.983 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.487 4.487 8 H 0.074 0.926 9 C 0.086 3.914 10 H 0.055 0.945 11 C 0.135 3.865 12 N -0.693 5.693 13 C 0.522 3.478 14 O -0.605 6.605 15 C -0.198 4.198 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.200 4.200 20 C -0.159 4.159 21 C -0.365 4.365 22 S 0.258 5.742 23 H 0.281 0.719 24 H 0.017 0.983 25 H 0.072 0.928 26 H 0.410 0.590 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -2.335 -6.040 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.065 3.935 10 H 0.073 0.927 11 C 0.011 3.989 12 N -0.342 5.342 13 C 0.310 3.690 14 O -0.488 6.488 15 C -0.219 4.219 16 C -0.183 4.183 17 C -0.182 4.182 18 C -0.277 4.277 19 C -0.230 4.230 20 C -0.189 4.189 21 C -0.502 4.502 22 S 0.520 5.480 23 H 0.093 0.907 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.246 0.754 27 H 0.171 0.829 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.716 -0.894 -6.753 7.760 hybrid contribution 1.002 -0.526 1.407 1.805 sum 4.718 -1.420 -5.346 7.271 Atomic orbital electron populations 1.67591 1.06977 1.27921 1.49785 1.25587 0.95157 1.02571 0.94486 0.85349 0.79232 0.78974 0.77426 1.18616 1.20803 1.21065 1.21650 0.93974 0.90444 1.46380 0.90786 1.17684 0.91926 0.96970 0.86874 0.92710 1.21331 0.93546 0.99254 0.84814 1.45763 1.11065 1.72091 1.05233 1.20445 0.88077 0.75265 0.85193 1.90616 1.17289 1.53463 1.87465 1.22267 1.02447 1.07945 0.89257 1.22999 1.04030 0.90925 1.00327 1.22996 1.00061 1.00442 0.94720 1.25033 1.01566 0.98748 1.02342 1.20032 1.04227 1.02204 0.96537 1.19908 0.98776 0.99977 1.00282 1.28029 1.05227 1.03772 1.13190 1.86387 1.27690 1.22105 1.11791 0.90692 0.96509 0.91006 0.75428 0.82914 0.90633 0.84546 0.84702 0.90125 0.85450 0.86010 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.07 6.53 21.45 0.14 -42.93 16 2 C 0.02 0.80 4.98 84.66 0.42 1.22 16 3 Si 0.96 38.77 29.54 68.60 2.03 40.79 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.49 -22.49 8.22 25.60 0.21 -22.28 16 8 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.09 3.86 2.53 -12.29 -0.03 3.83 16 10 H 0.05 2.28 8.09 -2.38 -0.02 2.26 16 11 C 0.14 6.21 4.82 86.38 0.42 6.63 16 12 N -0.69 -26.84 5.35 -463.06 -2.48 -29.32 16 13 C 0.52 20.16 7.61 87.66 0.67 20.83 16 14 O -0.61 -28.98 16.26 -3.02 -0.05 -29.03 16 15 C -0.20 -5.25 6.19 -11.54 -0.07 -5.32 16 16 C -0.15 -3.34 10.23 30.60 0.31 -3.03 16 17 C -0.14 -3.35 10.04 30.60 0.31 -3.04 16 18 C -0.16 -7.29 5.06 24.59 0.12 -7.17 16 19 C -0.20 -8.59 10.01 21.21 0.21 -8.38 16 20 C -0.16 -6.52 10.18 21.22 0.22 -6.31 16 21 C -0.37 -15.37 11.23 66.72 0.75 -14.62 16 22 S 0.26 11.91 18.49 -56.49 -1.04 10.86 16 23 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 24 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 26 H 0.41 13.58 8.23 -92.71 -0.76 12.82 16 27 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.30 7.67 -2.38 -0.02 2.28 16 32 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 33 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 34 H 0.14 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -59.25 299.55 2.48 -56.77 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.35 Total: 30.50 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.54 Total: -37.64 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -2.34 Total: -72.25 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 16 Polarization: 11.91 SS G_CDS: -1.04 Total: 10.86 kcal Total: -59.25 2.48 -56.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.202 kcal (2) G-P(sol) polarization free energy of solvation -59.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds